Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2272 107 1e-18 seq2396 104 2e-17 seq1067 100 2e-16 seq1439 96.9 2e-15 >seq2272 Length=9786 Score = 107 bits (118), Expect = 1e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| |||||| |||||| |||||||||||||| Sbjct 5749 CATGCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATC 5808 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || ||| |||| ||||||||||| || |||||||||| |||||||| || Sbjct 5809 GGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 5865 Score = 102 bits (112), Expect = 6e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||| |||||| ||||||||||| ||||| Sbjct 4744 CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 4803 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| |||| ||||||||||| || |||||||||| |||||||| || | ||| Sbjct 4804 AGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGG 4862 Score = 96.9 bits (106), Expect = 2e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| |||||| |||||| ||||||||||| || Sbjct 6248 CATACCACCGCGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 6307 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| ||||||||||| || |||||||||| |||||||| || | Sbjct 6308 AGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGG 6367 Query 44227 AGG 44229 ||| Sbjct 6368 AGG 6370 >seq2396 Length=9575 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 551 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 610 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || ||| |||| ||||||||||| ||||||||||||| ||||||||| || Sbjct 611 GGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTC 667 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 1009 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 1068 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || ||| |||| ||||||||||| ||||||||||||| ||||||||| || Sbjct 1069 GGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTC 1125 Score = 96.9 bits (106), Expect = 2e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 37 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 96 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| ||||||||||| ||||| ||||||| ||||||||| || | Sbjct 97 AGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGG 156 Query 44227 AGG 44229 ||| Sbjct 157 AGG 159 >seq1067 Length=17102 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| |||||||||||||| Sbjct 10217 CATGCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC 10158 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || ||| |||| ||||||||||| || || ||||||| |||||||| || | Sbjct 10157 GGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGG 10098 Query 44227 AGG 44229 ||| Sbjct 10097 AGG 10095 Score = 96.9 bits (106), Expect = 2e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| Sbjct 10749 TTGCATGCCACCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 10690 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || ||| |||| ||||||||||| || || ||||||| |||||||| || Sbjct 10689 GTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 10630 Query 44224 TGAAGG 44229 | ||| Sbjct 10629 CGGAGG 10624 Score = 95.1 bits (104), Expect = 9e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| |||||| |||||| ||||||||||| || Sbjct 11220 CATGCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 11161 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || ||| | || ||||||||||| || || ||||||| |||||||| || Sbjct 11160 GGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 11104 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||| |||||| ||||| ||||| ||||| Sbjct 12208 CCGCCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCC 12149 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| |||| ||||||||||| || || ||||||| |||||||| || | ||| Sbjct 12148 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGG 12090 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| || |||||||| || Sbjct 11675 CATGCCACCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 11616 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || ||| | || ||||||||||| || || ||||||| |||||||| || | Sbjct 11615 GGCCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGG 11556 Query 44227 AGG 44229 ||| Sbjct 11555 AGG 11553 >seq1439 Length=14137 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||||||||| || || |||||| ||||||||||| ||| Sbjct 3011 ATGCCGCCGCGCAGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 2952 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| |||| ||||||||||| ||||||||||||| |||||||| || Sbjct 2951 GCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 2896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960916786240