Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2272 118 1e-21 seq1439 118 1e-21 seq1067 118 1e-21 seq2396 113 4e-20 >seq2272 Length=9786 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || |||||| ||||||||| ||||| || |||| Sbjct 5752 GCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 5811 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||| || || ||||||||||| ||||||| ||| Sbjct 5812 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGGGG 5871 Query 41755 AACGC 41759 || || Sbjct 5872 AATGC 5876 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || |||||| ||||||||| ||||| ||||||| Sbjct 4743 GCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 4802 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| |||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 4803 CAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCG 4858 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||||| |||||||| ||||||||||||||| ||||| | Sbjct 5242 GCCACCGCGCAGGCGCAGCACCAAGTGCAGCGTTGACTCCTTCTGAATGTTGTAGTCAGC 5301 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 5302 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGGGG 5361 Score = 109 bits (120), Expect = 5e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||| ||||||||| ||||||||| ||||| ||||| | Sbjct 6252 CCACCGCGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 6311 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| |||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 6312 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCG 6366 >seq1439 Length=14137 Score = 118 bits (130), Expect = 1e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| || || || ||||||||| ||||| ||||||| Sbjct 3009 GCCGCCGCGCAGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 2950 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || |||||||||||||| || ||||||||||| ||||||| ||| Sbjct 2949 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 2890 >seq1067 Length=17102 Score = 118 bits (130), Expect = 1e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || |||||| ||||||||| ||||| ||||||| Sbjct 11217 GCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 11158 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 11157 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGG 11098 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || || ||| ||||||||| ||||| ||||||| Sbjct 10743 GCCACCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 10684 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| |||| || ||||||||||| ||||| ||||||||||| ||||||| Sbjct 10683 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 10628 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| || || ||| ||||||||| || || ||||||| Sbjct 12209 GCCGCCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGC 12150 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| |||| || ||||||||||| ||||| ||||||||||| ||||||| Sbjct 12149 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 12094 Score = 111 bits (122), Expect = 1e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || || ||| ||||||||||||||| ||||||| Sbjct 11672 GCCACCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 11613 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 || ||||| | || || ||||||||||| ||||| ||||||||||| ||||||| Sbjct 11612 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 11557 Score = 105 bits (116), Expect = 6e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || ||| ||||||||| ||||| || |||| Sbjct 10214 GCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 10155 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| |||| || ||||||||||| ||||| ||||||||||| ||||||| Sbjct 10154 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 10099 >seq2396 Length=9575 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||||| Sbjct 554 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 613 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || |||||||||||||| || ||||| ||||| ||||||| ||| Sbjct 614 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 673 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||||| Sbjct 1012 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1071 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || |||||||||||||| || ||||| ||||| ||||||| ||| Sbjct 1072 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 1131 Score = 111 bits (122), Expect = 1e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||| | Sbjct 40 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 99 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| |||| || ||||||||||||||||| ||||| ||||| ||||||| Sbjct 100 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCG 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462265166464000