Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq13 201 2e-46 seq8 143 6e-29 seq15 98.7 2e-15 >seq13 Length=549623 Score = 201 bits (222), Expect = 2e-46 Identities = 748/1145 (65%), Gaps = 57/1145 (5%) Strand=Plus/Minus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 |||||||| || | || || ||||| || ||||| || |||| | || ||||| ||| Sbjct 19913 GTGAAGATGTAACGTGGGCTTGCGTGATCCTTACCGCCTTGCAAACGCGTACCAAATTGA 19854 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||||| | | |||| ||||| || |||||| |||| || |||| ||||||| Sbjct 19853 CCGCTCGGCACGAGCAAGTTGATGTTGTTCGAACCGACGAAATCTTGCGCCAAGTTGACG 19794 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || ||| | || || | || ||||| ||||| ||| ||| || | ||||| || Sbjct 19793 ATGGTCATCGCGAGTGAAGCTTCGCCGTGATGATACGCGGAGTGCTCCGAGACATAGCCG 19734 Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATA-- 281979 || ||||| || || || | || || | | ||||| ||||| ||| | || | Sbjct 19733 CTCAACTGCGCGACTTTGATATCCGACTTGAGCTTGCGCTTGAA---GCATGAGAAGAGA 19677 Query 281980 -CTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCA 282038 | || ||||| || |||||||| || || || | |||||| |||| || |||| Sbjct 19676 ACCTTGCGTTGTGAGGGCTTGAAGCCGTCCACCATGCTCGGAATCGAGCGTAACAAGTCA 19617 Query 282039 TACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTCG--GGAACGGGAA---CCTCGG 282093 | ||||||||||| |||||||||| || || ||| | | | ||| |||| Sbjct 19616 GCTCTAGAGAACAAAATGAGTTCCTTGTTGATAAACTCGTCGTATC--GAATCGCCTC-- 19561 Query 282094 GCTTCTTGTGGTCAAGTTGGTTTCCCGGCTCGTATGCCGTCATCCACTCCTTGCGATCCT 282153 || || | |||| | | || |||||||| || ||| ||| | |||||||||| Sbjct 19560 GCCGCTCATATCCAAGAATG-TGCCTGGCTCGTACGCATTCAGCCAAGCTTTGCGATCCT 19502 Query 282154 CGGCCCGAGTCTTGTTGAAAGAACGATCGATGAGCTCTC---CAGAATCAGAAGTCCACG 282210 || | || ||||| |||| || ||||| | || | || ||| ||| Sbjct 19501 CGACACGCTTCTTGCTGAACGACATGTCGATCAAGTCACCGTCACCATCGCTTTCCCAGA 19442 Query 282211 TAAACGTCTTCATAAGAGTCTTCAGGTTGC-TGAAGTAATGCTTGGCATCAGT-GCTGGA 282268 | || |||| | || ||| | | |||||| | |||||| ||| | ||| | Sbjct 19441 TGAAATTCTTGCGGTG-GTGATCAAGAGACGCGAAGTACTCCTTGGCTTCATTCGCT-GT 19384 Query 282269 ACTCGTACCGAGACCCTTGTAATACTTGATTTGATACTTAGA-ATAATCCTTCG-TGGTC 282326 |||||||| ||||||||||| ||||||| || | | | | | |||| | | | | Sbjct 19383 GCTCGTACCAAGACCCTTGTAGTACTTGA--TGCTCCATCCAGCCGAGCCTTGGTTCGCC 19326 Query 282327 TTCACCCAATCCTCGTAATCCGGAAGACTATAAAA----TTCGCGAACGTCCTTTCCTTT 282382 | | |||| |||||| || || | | || || |||| || | ||| || || Sbjct 19325 TCCTTCCAAGTCTCGTACTCGGGCAACGTGTAGAACACCTTCG---AC-TGCTTCCCCTT 19270 Query 282383 CTTGGCGACCACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAGA-C 282441 | || | ||| || |||||||||| ||| ||||| ||||| | || ||| Sbjct 19269 GGTCGCCTTGATGATCGGCGTGATGAACTCGAGCAAAAAACCAGGAATCTTAAGCAGAGA 19210 Query 282442 TGGGAAAACAGCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACAT 282501 |||||| ||| || || ||||| |||| |||||| |||||||| || ||| || Sbjct 19209 TGGGAAGTGAGC-GTGCAAGAAGTTGATGAGAAGACCCTTAATGTGAGAACCATCATGAT 19151 Query 282502 CCGCGTCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTT 282561 | ||| ||||||||||| | | |||||| | || || | | | |||| | | Sbjct 19150 CTTGGTCTGTCATGATCATGAGCTTACCGTAACGCAACGATTTGGCGCTATCGTACTCCT 19091 Query 282562 TACCGGTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATAC 282621 | ||| || || || | |||||| |||| | ||||||| |||| ||| |||| Sbjct 19090 TGCCGTGCTGCAGACCGAGAATTTGCTTGATGTTGTTGATTTCGGCGTTGTTTTTGAT-T 19032 Query 282622 TTGCCA-CAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATAT 282680 | | || || |||||||| |||||||| | ||||| || || || || |||||||| Sbjct 19031 TGGTCATGCGAAGCATCGCGCACGTTCAGAAGTTTACCACGAAGCGGGAAGACACCATAC 18972 Query 282681 CTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTG--TTGCTGCGGAATCTCCCT 282738 | || | || || ||||| || || | || || | ||| || ||||| || | Sbjct 18971 TTGTCTCTGCCAACGACGGAGAGACCGCTCACAGCGAGCGCCTTG--GCAGAATCCCCTT 18914 Query 282739 CCGTCAAGATGAGAGTACACATCTTACTATGATTTGTGCCCGCC--CAT-----GCAGCA 282791 | || | || | |||||| ||| || || | || || ||| || || Sbjct 18913 CGGTGAGAATCAAAGTACA----AGACTCAGAGTTTCGTCCACCGGCATCGTTGGCGTCA 18858 Query 282792 TCGTTTAGTTTAGGGATGCCGGACACTCGGGACTTCTTGGCACCGTCGGTTTTCTTCAGT 282851 ||| || || ||||| || | || || || |||||||||||| || ||||||||| Sbjct 18857 TCG---AGCTTCGGGATTCCCGTCAGACGTGAGCGCTTGGCACCGTCAGTCTTCTTCAGT 18801 Query 282852 TCCTT 282856 ||||| Sbjct 18800 TCCTT 18796 >seq8 Length=717457 Score = 143 bits (158), Expect = 6e-29 Identities = 364/544 (67%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 230101 GCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160 || || || | |||||| ||| | || ||||| | ||||| ||| ||| | || Sbjct 90218 GCTATCGAGACCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGTGGATTGAC 90159 Query 230161 CCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220 | | | ||||||||||||||||| | || | | ||| |||| ||||| | || Sbjct 90158 TCCAGCGACTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTATCTTCTTC 90099 Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 230280 || || |||||| |||||| ||||| ||| ||| | ||||| || | Sbjct 90098 TCTGGTTCGTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCGGGTTTGACC 90039 Query 230281 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATG 230340 | || |||||| ||||| |||||| ||||| | || | | || | | || | | Sbjct 90038 TTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTTG-CTTGCCTCT- 89981 Query 230341 TATTCAAA--GCTCCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGA 230396 ||| | || |||| | ||||||| || | || || | | | || | || || Sbjct 89980 TATACCAAATGCTCAACAACAAGCCGGACGAAGA-AGTCGTGCGTA-AGATTGTCACCGA 89923 Query 230397 AGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCA 230455 ||| ||||| | ||| ||||||||| | || ||| || |||| || ||| || |||| | Sbjct 89922 AGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCTTCCGTG-CGCGCTCGTTGGTA 89864 Query 230456 TGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCAC 230515 ||||||| | | ||| | | ||||| |||| ||| ||||||| | | || | | Sbjct 89863 TGAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGACCACTTGTTCACCTCCC 89804 Query 230516 TTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGC 230575 ||||| || | ||||||| | |||||| |||| | ||||| ||||| |||| Sbjct 89803 TTGGTATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACTGGATGGAACTCATCTCGC 89744 Query 230576 TTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGA 230635 | ||||| ||||||||||||||||| ||||| ||| | || || || | | | ||||| | Sbjct 89743 TCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAATACCAAAAGGCGGGTGTTA 89684 Query 230636 TGAA 230639 |||| Sbjct 89683 TGAA 89680 >seq15 Length=511330 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 318980 CGTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTG 319039 ||||||| | || ||||||||||||| || |||||||| |||| |||| |||||| | Sbjct 117007 CGTCAAGTTT-TCCTTGTCTTCACCGGTGGAGAAACGCCATCGGATGTACTCGTTGGGCG 117065 Query 319040 TCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCA 319099 || |||| | || | ||||| ||||||||| || ||||| || ||||| || |||| Sbjct 117066 TCTTGTCCAAGTGCTGCTCGACGTGGTGGAACGCGTGCTGCGCGACGTACGCGTAGCGCA 117125 Query 319100 TATTTGGATGCTTCCAAACACTACCGATGGT--GGCTTCCATTTGTCCCGTGAGCACCTT 319157 |||| || || ||| || |||| |||| ||| || | || ||||| | || Sbjct 117126 TATTCGGGTGACGCCAGACGGTACC-TTGGTCCGGC-TCAGCCTCACCAGTGAGGAGTTT 117183 Query 319158 AATGAGGGTGCTTTTCCCCGCACCGTT 319184 |||| ||| || ||||||||||| Sbjct 117184 GATGAACGTGGACTTACCCGCACCGTT 117210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823728932600