Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq12 150 2e-31
seq13 87.8 2e-12
>seq12
Length=542657
Score = 150 bits (166), Expect = 2e-31
Identities = 375/564 (66%), Gaps = 9/564 (2%)
Strand=Plus/Plus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || || ||||| ||||| || || || ||||||| |||||| || ||||| || |
Sbjct 198027 ACAGCAAGCAAGCGAAGTCGCAGTGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGA 198086
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || || ||| ||||| |||||| || || | ||| || || ||| ||| ||||||
Sbjct 198087 AGGTTAAACCGCGCATCAATCCTCGCTTTTTCAGCCAGAAGATGGCGCAGAATGACCCAC 198146
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
||||| || || |||||| | || || | | | | ||||||| | |||||||
Sbjct 198147 TGAAGAAGATTCCTTCGACGCACGCGAATCCCACCAGCCTTTCGGCGAAGCTCGCGTC-- 198204
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTTTC 17193
| ||| ||||| | || |||| || ||||| | | || || || || |
Sbjct 198205 -GCTACCGATCCAATGAAGCGCCCAGTCTGCTTTCATCGCCA--CAGTCGGCACTGTGTG 198261
Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253
||||| ||| |||| ||| | || | || | || ||||| || | || ||
Sbjct 198262 AATGGCGCGAAACAATTCGGATTTCTTCTTCGGATCCTTGATGTACGTGTCCAAAAGCAG 198321
Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313
|||||| ||| ||| |||||||| || || | ||||||||||| || |||| ||
Sbjct 198322 CGAGTACATCTCGCTGTGAATGTTCTCGATCGCGAGTTGAAATCCGTAGAACGATCGCGC 198381
Query 17314 TTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372
|| | | || || || | | | |||||| ||||| ||| || |||||||
Sbjct 198382 CTCTGGAAGCTGCACGTCGCTCAT-GAATCGCGAGCACAGATTCTCGAGAACAATGCCGT 198440
Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432
|||||| ||||||||||||||| | || | ||| | || |||| | | ||
Sbjct 198441 CGCTCGAGGCGAAAAACGCCAACACGTGAGACACGAAGTGCTTCTCGTTCTCGTTCAGCG 198500
Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492
|||| ||||| | || | | | ||| || || || | |||||||| || |||
Sbjct 198501 TCTGCCAATCCTTATAGTCGTACGTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCT 198560
Query 17493 CTGCCTTTTTATACATATTCCAAA 17516
| ||||| |||||||| | |||||
Sbjct 198561 CCGCCTTCTTATACATCTCCCAAA 198584
>seq13
Length=549623
Score = 87.8 bits (96), Expect = 2e-12
Identities = 175/257 (68%), Gaps = 2/257 (1%)
Strand=Plus/Minus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842
|||||||| || | ||| ||||| |||| || || |||||| || ||||| | ||
Sbjct 292199 TTCATATACCGAACCTTGCCGAAGACGGCGCGCTCTTTCCACCCTTGATCGTGCACGCCG 292140
Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902
|| | | ||| | |||||| ||||| ||||| ||||| ||| ||||| | || |
Sbjct 292139 GCGATTGACCACATGCATCCGACGTAGCCGTTCGGATCGAGTCCGTCTAAAGCATACGTG 292080
Query 119903 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961
||||| | | ||| | | | | | |||| |||| |||| | |||| || |||||
Sbjct 292079 TCGTTGAGTTGGATGGCTGTCTCA-AGCGCAATTTCCGGAGACGGCGTCCACTCGAGTAT 292021
Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021
|| || ||||||||||| | | | |||| ||||| | ||| | || || |
Sbjct 292020 CTTCTTTGCCCAGTACATTCTCATGAATCCGTGCATCCTTCCTAGATGATACAGCTCTTT 291961
Query 120022 TTGTGCGGCGTTCCATA 120038
||| || ||||||||||
Sbjct 291960 TTGCGCCGCGTTCCATA 291944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545470613600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |