Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq12 150 2e-31 seq13 87.8 2e-12 >seq12 Length=542657 Score = 150 bits (166), Expect = 2e-31 Identities = 375/564 (66%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||| ||||| || || || ||||||| |||||| || ||||| || | Sbjct 198027 ACAGCAAGCAAGCGAAGTCGCAGTGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGA 198086 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || ||| ||||| |||||| || || | ||| || || ||| ||| |||||| Sbjct 198087 AGGTTAAACCGCGCATCAATCCTCGCTTTTTCAGCCAGAAGATGGCGCAGAATGACCCAC 198146 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||| || || |||||| | || || | | | | ||||||| | ||||||| Sbjct 198147 TGAAGAAGATTCCTTCGACGCACGCGAATCCCACCAGCCTTTCGGCGAAGCTCGCGTC-- 198204 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTTTC 17193 | ||| ||||| | || |||| || ||||| | | || || || || | Sbjct 198205 -GCTACCGATCCAATGAAGCGCCCAGTCTGCTTTCATCGCCA--CAGTCGGCACTGTGTG 198261 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253 ||||| ||| |||| ||| | || | || | || ||||| || | || || Sbjct 198262 AATGGCGCGAAACAATTCGGATTTCTTCTTCGGATCCTTGATGTACGTGTCCAAAAGCAG 198321 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||||| ||| ||| |||||||| || || | ||||||||||| || |||| || Sbjct 198322 CGAGTACATCTCGCTGTGAATGTTCTCGATCGCGAGTTGAAATCCGTAGAACGATCGCGC 198381 Query 17314 TTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 || | | || || || | | | |||||| ||||| ||| || ||||||| Sbjct 198382 CTCTGGAAGCTGCACGTCGCTCAT-GAATCGCGAGCACAGATTCTCGAGAACAATGCCGT 198440 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 |||||| ||||||||||||||| | || | ||| | || |||| | | || Sbjct 198441 CGCTCGAGGCGAAAAACGCCAACACGTGAGACACGAAGTGCTTCTCGTTCTCGTTCAGCG 198500 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 |||| ||||| | || | | | ||| || || || | |||||||| || ||| Sbjct 198501 TCTGCCAATCCTTATAGTCGTACGTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCT 198560 Query 17493 CTGCCTTTTTATACATATTCCAAA 17516 | ||||| |||||||| | ||||| Sbjct 198561 CCGCCTTCTTATACATCTCCCAAA 198584 >seq13 Length=549623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 |||||||| || | ||| ||||| |||| || || |||||| || ||||| | || Sbjct 292199 TTCATATACCGAACCTTGCCGAAGACGGCGCGCTCTTTCCACCCTTGATCGTGCACGCCG 292140 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 || | | ||| | |||||| ||||| ||||| ||||| ||| ||||| | || | Sbjct 292139 GCGATTGACCACATGCATCCGACGTAGCCGTTCGGATCGAGTCCGTCTAAAGCATACGTG 292080 Query 119903 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961 ||||| | | ||| | | | | | |||| |||| |||| | |||| || ||||| Sbjct 292079 TCGTTGAGTTGGATGGCTGTCTCA-AGCGCAATTTCCGGAGACGGCGTCCACTCGAGTAT 292021 Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021 || || ||||||||||| | | | |||| ||||| | ||| | || || | Sbjct 292020 CTTCTTTGCCCAGTACATTCTCATGAATCCGTGCATCCTTCCTAGATGATACAGCTCTTT 291961 Query 120022 TTGTGCGGCGTTCCATA 120038 ||| || |||||||||| Sbjct 291960 TTGCGCCGCGTTCCATA 291944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545470613600