Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq12 113 5e-20 seq13 86.0 6e-12 >seq12 Length=542657 Score = 113 bits (124), Expect = 5e-20 Identities = 364/557 (65%), Gaps = 11/557 (2%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||||||||| || | |||||||||| |||||| || |||||||| || ||||| Sbjct 198035 CAAGCGAAGTCGCAGTGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTTAAA 198094 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAA 16320 || |||| |||||| || || | |||||| || || ||| |||||||| ||||| Sbjct 198095 CCGCGCATCAATCCTCGCTTTTTCAGCCAGAAGATGGC-GCAGAATGACCCACTGAAGAA 198153 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 || || || || | || || | | | | ||| ||| | | || || ||| Sbjct 198154 GATTCCTTCGACGCACGCGAATCCCACCAGCCTTTCGGCGAAGCTCGCGTC---GCTACC 198210 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC--CATCGTTTCTATGGCC 16438 ||||| | | |||| || || ||| | ||| || || || | ||||| Sbjct 198211 GATCCAATGAAGCGCCCAGTCTGC--TTTCATCGCCACAGTCGGCACTGTGTGAATGGCG 198268 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||||||| ||| | || ||| | || ||||| || | || | |||| Sbjct 198269 CGAAACAATTCGGATTTCTTCTTCGGATCCTTGATGTACGTGTCCAAAAGCAGCGAGTAC 198328 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 || || ||| |||||||| || || | |||||||| ||||| |||| ||||| | Sbjct 198329 ATCTCGCTGTGAATGTTCTCGATCGCGAGTTGAAATCCGTAGAACGATCGCGCCTCTGGA 198388 Query 16559 ATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | || || || | | | ||||| ||| ||||| || || ||||| || | Sbjct 198389 AGCTGCACGTCGCTCAT-GAATCGCGAGCACAGATTCTCGAGAACAATGCCGTCGCTCGA 198447 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 || ||||||||||| | ||| | ||| | || |||| | || | ||||| Sbjct 198448 GGCGAAAAACGCCAACACGTGAGACACGAAGTGCTTCTCGTTCTCGTTCAGCGTCTGCCA 198507 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 ||| || | || | | | ||| || || || | |||||||||||| ||| | ||||| Sbjct 198508 ATCCTTATAGTCGTACGTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCTCCGCCTT 198567 Query 16738 TTTATACATTTTCCAAA 16754 |||||||| | ||||| Sbjct 198568 CTTATACATCTCCCAAA 198584 >seq13 Length=549623 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 ||||| || || | ||| || || |||| ||||| ||||| || ||||| | || Sbjct 292199 TTCATATACCGAACCTTGCCGAAGACGGCGCGCTCTTTCCACCCTTGATCGTGCACGCCG 292140 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 || | || ||| | ||||| ||||| ||||| ||||| ||||||||| | ||| | Sbjct 292139 GCGATTGACCACATGCATCCGACGTAGCCGTTCGGATCGAGTCCGTCTAAAGCATACGTG 292080 Query 119056 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAt 119114 ||||| | | ||| | | | | | |||| ||||||||| | |||| || ||||| Sbjct 292079 TCGTTGAGTTGGATGGCTGTCTCA-AGCGCAATTTCCGGAGACGGCGTCCACTCGAGTAT 292021 Query 119115 ttttttAGCCCAGTACATACGTAAATACCCGTGCAT 119150 || || ||||||||||| | | | |||||||| Sbjct 292020 CTTCTTTGCCCAGTACATTCTCATGAATCCGTGCAT 291985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414272146400