Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq12 113 5e-20
seq13 86.0 6e-12
>seq12
Length=542657
Score = 113 bits (124), Expect = 5e-20
Identities = 364/557 (65%), Gaps = 11/557 (2%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| ||||||||||| || | |||||||||| |||||| || |||||||| || |||||
Sbjct 198035 CAAGCGAAGTCGCAGTGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTTAAA 198094
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAA 16320
|| |||| |||||| || || | |||||| || || ||| |||||||| |||||
Sbjct 198095 CCGCGCATCAATCCTCGCTTTTTCAGCCAGAAGATGGC-GCAGAATGACCCACTGAAGAA 198153
Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380
|| || || || | || || | | | | ||| ||| | | || || |||
Sbjct 198154 GATTCCTTCGACGCACGCGAATCCCACCAGCCTTTCGGCGAAGCTCGCGTC---GCTACC 198210
Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC--CATCGTTTCTATGGCC 16438
||||| | | |||| || || ||| | ||| || || || | |||||
Sbjct 198211 GATCCAATGAAGCGCCCAGTCTGC--TTTCATCGCCACAGTCGGCACTGTGTGAATGGCG 198268
Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498
|||||||| ||| | || ||| | || ||||| || | || | ||||
Sbjct 198269 CGAAACAATTCGGATTTCTTCTTCGGATCCTTGATGTACGTGTCCAAAAGCAGCGAGTAC 198328
Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558
|| || ||| |||||||| || || | |||||||| ||||| |||| ||||| |
Sbjct 198329 ATCTCGCTGTGAATGTTCTCGATCGCGAGTTGAAATCCGTAGAACGATCGCGCCTCTGGA 198388
Query 16559 ATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617
| || || || | | | ||||| ||| ||||| || || ||||| || |
Sbjct 198389 AGCTGCACGTCGCTCAT-GAATCGCGAGCACAGATTCTCGAGAACAATGCCGTCGCTCGA 198447
Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677
|| ||||||||||| | ||| | ||| | || |||| | || | |||||
Sbjct 198448 GGCGAAAAACGCCAACACGTGAGACACGAAGTGCTTCTCGTTCTCGTTCAGCGTCTGCCA 198507
Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737
||| || | || | | | ||| || || || | |||||||||||| ||| | |||||
Sbjct 198508 ATCCTTATAGTCGTACGTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCTCCGCCTT 198567
Query 16738 TTTATACATTTTCCAAA 16754
|||||||| | |||||
Sbjct 198568 CTTATACATCTCCCAAA 198584
>seq13
Length=549623
Score = 86.0 bits (94), Expect = 6e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995
||||| || || | ||| || || |||| ||||| ||||| || ||||| | ||
Sbjct 292199 TTCATATACCGAACCTTGCCGAAGACGGCGCGCTCTTTCCACCCTTGATCGTGCACGCCG 292140
Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055
|| | || ||| | ||||| ||||| ||||| ||||| ||||||||| | ||| |
Sbjct 292139 GCGATTGACCACATGCATCCGACGTAGCCGTTCGGATCGAGTCCGTCTAAAGCATACGTG 292080
Query 119056 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAt 119114
||||| | | ||| | | | | | |||| ||||||||| | |||| || |||||
Sbjct 292079 TCGTTGAGTTGGATGGCTGTCTCA-AGCGCAATTTCCGGAGACGGCGTCCACTCGAGTAT 292021
Query 119115 ttttttAGCCCAGTACATACGTAAATACCCGTGCAT 119150
|| || ||||||||||| | | | ||||||||
Sbjct 292020 CTTCTTTGCCCAGTACATTCTCATGAATCCGTGCAT 291985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511414272146400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |