Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq12 104 2e-17 seq20 87.8 2e-12 seq8 87.8 2e-12 seq7 82.4 6e-11 >seq12 Length=542657 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||| | |||||||| || | ||||||||||| || ||||| ||||| ||| Sbjct 189344 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189285 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| || || || | || | | ||||| ||| || Sbjct 189284 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189225 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | ||| || || || |||| | Sbjct 189224 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189165 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||||| || | ||| || || || |||||||| Sbjct 189164 TCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||| | |||||||| || | ||||||||||| || ||||| ||||| ||| Sbjct 189572 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189513 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| || || || | || | | ||||| ||| || Sbjct 189512 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189453 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | ||| || || || |||| | Sbjct 189452 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189393 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| || || | ||| || || || |||||||| Sbjct 189392 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||| | |||||||| || | ||||||||||| || ||||| ||||| ||| Sbjct 189800 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189741 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| || || || | || | | ||||| ||| || Sbjct 189740 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189681 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | ||| || || || |||| | Sbjct 189680 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189621 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| || || | ||| || || || |||||||| Sbjct 189620 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 >seq20 Length=165357 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/155 (75%), Gaps = 12/155 (8%) Strand=Plus/Plus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGC-GTCGGGCGCGCCGTG-TC--TCTG 23864 ||||| || || ||||| |||||||| |||| | ||||| ||||||||| || ||| Sbjct 75707 ACGTTTCCGAGATCGCCCGCGTGTCGCACCGCATCCGTCGG-CGCGCCGTGATCCATCTT 75765 Query 23865 GCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTC 23924 | | |||||||||||| || | |||| |||| ||||| ||||||| ||||| || Sbjct 75766 GT---TCGGGTTAAAGTGCGGTCCCGTGGACATGCACCCGTTCGTGGTGTCACCGAACTC 75822 Query 23925 GTGCACGTGAAAACCGTGCAGCCC----GCGAGGC 23955 ||| | ||| ||||||||| ||| ||||||| Sbjct 75823 GTGAATGTGCAAACCGTGCTTCCCCGGGGCGAGGC 75857 >seq8 Length=717457 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||||| | | ||||| || | || ||||||||||| ||||| || |||||| Sbjct 310648 CCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCC 310589 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || ||||||| ||||| || ||||| |||| | | ||||| ||| || Sbjct 310588 AACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGG 310529 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| ||||| | | ||| || || || |||| Sbjct 310528 ATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 310469 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 |||| ||| |||||||| || || Sbjct 310468 TCCAAGGTGATGGTCTTACCAGT 310446 >seq7 Length=770246 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| |||| | | ||||| || | |||||||||||||| ||||| ||||| || Sbjct 134647 CCCCCGCGCAAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCG 134588 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || || ||||| | || || | ||||| ||| || Sbjct 134587 AGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGG 134528 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| ||||| | | ||| || || || |||| Sbjct 134527 ATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 134468 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 |||| ||| |||||||| || || Sbjct 134467 TCCAAGGTGATGGTCTTACCCGT 134445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259097074320