Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12 205 1e-47 seq8 138 1e-27 seq7 132 5e-26 >seq12 Length=542657 Score = 205 bits (226), Expect = 1e-47 Identities = 389/560 (69%), Gaps = 17/560 (3%) Strand=Plus/Minus Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704 ||||| || ||||| |||||| || ||||| | |||||||| || || | | ||| Sbjct 198576 ATGTATAAGAAGGCGGAGGCGAGCTTTTGGACGGCGGAGGAGGTTGATTTGACGTACGAC 198517 Query 116705 ACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | || ||| || |||| |||||| |||||| || ||| | |||||| |||| Sbjct 198516 TATAAGGATTGGCAGACGCT-GAACGAGAACGAGAAGCACTTCGTGTCTCACGTGTTGGC 198458 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-G 116822 ||||||||| | ||||||||||| || |||||||||| | ||| ||| | || | Sbjct 198457 GTTTTTCGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCGCGATTC-ATGAGCG 198399 Query 116823 AGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGC 116882 | |||||| | | |||||||| | |||||||| ||||| |||| || |||||| | | Sbjct 198398 ACGTGCAGCTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCGATCGAGAACATTC 198339 Query 116883 ACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCC 116942 || || ||||| ||| || | ||||||||| | | || || |||| ||| Sbjct 198338 ACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGATCCGAAGAAGAA-ATCC 198280 Query 116943 G-TTTGTTGAACGCCATCGAGACGATGCCG--TGCGTCAAAGAGAAGGCCGAGTGGGCGC 116999 | ||||| |||||| | || ||||| || | | | ||| || || ||||||| Sbjct 198279 GAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGCGA--TGAAAGCAGACTGGGCGC 198222 Query 117000 TGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCG 117059 | | ||||| ||| || || || ||||| ||| | ||||||| |||||| || Sbjct 198221 TTCATTGGAT---CGGTAGCGACGCGAGCTTCGCCGAAAGGCTGGTGGGATTCGCGTGCG 198165 Query 117060 TCGAGGGCGTCTTCTT--TTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGG 117117 |||| || ||||||| | || || ||| |||||| || ||||| || || || || Sbjct 198164 TCGAAGGAATCTTCTTCAGTGGGTCA--TTCTGCGCCATCTTCTGGCTGAAAAAGCGAGG 198107 Query 117118 CCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTG 117177 | |||| ||| | || ||| ||||||||||||| | | ||||| || |||| || Sbjct 198106 ATTGATGCGCGGTTTAACCTTCTCCAACGAGCTCATCAGCCGAGACGAAGGCTTGCACTG 198047 Query 117178 CGACTTTGCCTGTTTGCTGT 117197 |||||| || || ||||||| Sbjct 198046 CGACTTCGCTTGCTTGCTGT 198027 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||||||||| ||||| || |||| || || || | Sbjct 189118 ATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCG 189177 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || |||||||| |||| || Sbjct 189178 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189236 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || ||||| || |||| ||||| | ||||||||| Sbjct 189237 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189296 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||||||| || | ||| | |||||| | || ||| Sbjct 189297 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189345 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||||||||| || ||||| || |||| || || || | Sbjct 189346 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189405 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || |||||||| |||| || Sbjct 189406 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189464 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || ||||| || |||| ||||| | ||||||||| Sbjct 189465 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189524 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||||||| || | ||| | |||||| | || ||| Sbjct 189525 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189573 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||||||||| || ||||| || |||| || || || | Sbjct 189574 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189633 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || |||||||| |||| || Sbjct 189634 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189692 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || ||||| || |||| ||||| | ||||||||| Sbjct 189693 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189752 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||||||| || | ||| | |||||| | || ||| Sbjct 189753 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| |||||||| | |||| ||| || || ||||| || || | ||| Sbjct 188992 GGGATCCCGCCGGATCAGCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGATGGTCGC 189051 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || | |||||||||||||||||||||| ||||||| || | ||| | |||||| | Sbjct 189052 ACTTTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGC 189111 Query 40912 GGCGGC 40917 || ||| Sbjct 189112 GGTGGC 189117 >seq8 Length=717457 Score = 138 bits (152), Expect = 1e-27 Identities = 212/302 (70%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947 ||||||||||| | |||||| |||||| | ||| |||||| || ||| Sbjct 90284 GAAATGTATTCCTTGTTGATCGACCAGTACGTCAAGGATCCGGCCGAGAAGAGCCACTTG 90225 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||| |||||||| || || ||||| || ||||||| || |||||| || ||| Sbjct 90224 TTCCGCGCTATCGAGACCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGTGG 90165 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || | | ||| || | | || | |||||| ||| |||| |||||| | | ||||| Sbjct 90164 ATTGACTCCAGCGA---CTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGT 90108 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || || ||| | |||| | ||||| ||||| ||||| || ||||| Sbjct 90107 ATCTTCTTCTCTGGTTCGTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCG 90048 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || |||| ||| ||||||||||||||| | || ||||| |||| | |||||||| Sbjct 90047 GGTTTGACCTTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTTGCT 89988 Query 117188 TG 117189 || Sbjct 89987 TG 89986 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || ||||||||| | || || || || | |||| | | | |||| | |||| Sbjct 310446 ACTGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACG-TGAAGGC 310504 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | || || ||||||||||| |||| |||||||| | || | |||||| || Sbjct 310505 GAAGATCCAAGATAAGGAGGGCATCCCGCCGGATCAGCAACGTTTGATTTTCGCGGGGAA 310564 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||| | || ||||||||||| |||||| | ||||| || Sbjct 310565 GCAGCTCGAGGACGGCCGCACGTTGGCGGATTACAACATCCAAAAGGAGTCTACGCTCCA 310624 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||||||||||| | || || Sbjct 310625 CTTGGTGTTGCGCTTGCGAGGTGG 310648 >seq7 Length=770246 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 ||||| || ||||||||| | || || || || | |||| | | | |||| | |||| Sbjct 134445 ACGGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACG-TGAAGGC 134503 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | || || ||||| ||||| |||| |||||||| || |||| |||||| || Sbjct 134504 GAAGATCCAAGATAAGGAGGGGATCCCGCCGGATCAGCAACGTCTGATCTTCGCGGGTAA 134563 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || |||| ||||| ||| ||||||||||||||| |||||| ||||||| || Sbjct 134564 GCAACTCGAGGACGGCCGCACGCTCGCCGACTACAACATCCAAAAGGAGTCCACGCTCCA 134623 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 | |||||||||||| | || || || Sbjct 134624 CTTGGTGTTGCGCTTGCGCGGGGGTGG 134650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219071195200