Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq12 205 1e-47
seq8 138 1e-27
seq7 132 5e-26
>seq12
Length=542657
Score = 205 bits (226), Expect = 1e-47
Identities = 389/560 (69%), Gaps = 17/560 (3%)
Strand=Plus/Minus
Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704
||||| || ||||| |||||| || ||||| | |||||||| || || | | |||
Sbjct 198576 ATGTATAAGAAGGCGGAGGCGAGCTTTTGGACGGCGGAGGAGGTTGATTTGACGTACGAC 198517
Query 116705 ACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763
| || ||| || |||| |||||| |||||| || ||| | |||||| ||||
Sbjct 198516 TATAAGGATTGGCAGACGCT-GAACGAGAACGAGAAGCACTTCGTGTCTCACGTGTTGGC 198458
Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-G 116822
||||||||| | ||||||||||| || |||||||||| | ||| ||| | || |
Sbjct 198457 GTTTTTCGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCGCGATTC-ATGAGCG 198399
Query 116823 AGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGC 116882
| |||||| | | |||||||| | |||||||| ||||| |||| || |||||| | |
Sbjct 198398 ACGTGCAGCTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCGATCGAGAACATTC 198339
Query 116883 ACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCC 116942
|| || ||||| ||| || | ||||||||| | | || || |||| |||
Sbjct 198338 ACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGATCCGAAGAAGAA-ATCC 198280
Query 116943 G-TTTGTTGAACGCCATCGAGACGATGCCG--TGCGTCAAAGAGAAGGCCGAGTGGGCGC 116999
| ||||| |||||| | || ||||| || | | | ||| || || |||||||
Sbjct 198279 GAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGCGA--TGAAAGCAGACTGGGCGC 198222
Query 117000 TGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCG 117059
| | ||||| ||| || || || ||||| ||| | ||||||| |||||| ||
Sbjct 198221 TTCATTGGAT---CGGTAGCGACGCGAGCTTCGCCGAAAGGCTGGTGGGATTCGCGTGCG 198165
Query 117060 TCGAGGGCGTCTTCTT--TTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGG 117117
|||| || ||||||| | || || ||| |||||| || ||||| || || || ||
Sbjct 198164 TCGAAGGAATCTTCTTCAGTGGGTCA--TTCTGCGCCATCTTCTGGCTGAAAAAGCGAGG 198107
Query 117118 CCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTG 117177
| |||| ||| | || ||| ||||||||||||| | | ||||| || |||| ||
Sbjct 198106 ATTGATGCGCGGTTTAACCTTCTCCAACGAGCTCATCAGCCGAGACGAAGGCTTGCACTG 198047
Query 117178 CGACTTTGCCTGTTTGCTGT 117197
|||||| || || |||||||
Sbjct 198046 CGACTTCGCTTGCTTGCTGT 198027
Score = 154 bits (170), Expect = 2e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || |||||||||||||| ||||| || |||| || || || |
Sbjct 189118 ATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCG 189177
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| || |||||||| |||| ||
Sbjct 189178 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189236
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| || || ||||| || |||| ||||| | |||||||||
Sbjct 189237 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189296
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| ||||||| || | ||| | |||||| | || |||
Sbjct 189297 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189345
Score = 149 bits (164), Expect = 6e-31
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || ||||||||||| || ||||| || |||| || || || |
Sbjct 189346 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189405
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| || |||||||| |||| ||
Sbjct 189406 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189464
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| || || ||||| || |||| ||||| | |||||||||
Sbjct 189465 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189524
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| ||||||| || | ||| | |||||| | || |||
Sbjct 189525 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189573
Score = 149 bits (164), Expect = 6e-31
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || ||||||||||| || ||||| || |||| || || || |
Sbjct 189574 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189633
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||||| || || | ||||| || |||||||| |||| ||
Sbjct 189634 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189692
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| || || ||||| || |||| ||||| | |||||||||
Sbjct 189693 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189752
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| ||||||| || | ||| | |||||| | || |||
Sbjct 189753 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189801
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
|| ||||| |||| |||||||| | |||| ||| || || ||||| || || | |||
Sbjct 188992 GGGATCCCGCCGGATCAGCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGATGGTCGC 189051
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| | |||||||||||||||||||||| ||||||| || | ||| | |||||| |
Sbjct 189052 ACTTTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGC 189111
Query 40912 GGCGGC 40917
|| |||
Sbjct 189112 GGTGGC 189117
>seq8
Length=717457
Score = 138 bits (152), Expect = 1e-27
Identities = 212/302 (70%), Gaps = 3/302 (1%)
Strand=Plus/Minus
Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947
||||||||||| | |||||| |||||| | ||| |||||| || |||
Sbjct 90284 GAAATGTATTCCTTGTTGATCGACCAGTACGTCAAGGATCCGGCCGAGAAGAGCCACTTG 90225
Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007
|| ||| |||||||| || || ||||| || ||||||| || |||||| || |||
Sbjct 90224 TTCCGCGCTATCGAGACCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGTGG 90165
Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067
|| | | ||| || | | || | |||||| ||| |||| |||||| | | |||||
Sbjct 90164 ATTGACTCCAGCGA---CTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGT 90108
Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127
||||||| || || ||| | |||| | ||||| ||||| ||||| || |||||
Sbjct 90107 ATCTTCTTCTCTGGTTCGTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCG 90048
Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187
|| |||| ||| ||||||||||||||| | || ||||| |||| | ||||||||
Sbjct 90047 GGTTTGACCTTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTTGCT 89988
Query 117188 TG 117189
||
Sbjct 89987 TG 89986
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| || || ||||||||| | || || || || | |||| | | | |||| | ||||
Sbjct 310446 ACTGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACG-TGAAGGC 310504
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | || || ||||||||||| |||| |||||||| | || | |||||| ||
Sbjct 310505 GAAGATCCAAGATAAGGAGGGCATCCCGCCGGATCAGCAACGTTTGATTTTCGCGGGGAA 310564
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| ||||| | || ||||||||||| |||||| | ||||| ||
Sbjct 310565 GCAGCTCGAGGACGGCCGCACGTTGGCGGATTACAACATCCAAAAGGAGTCTACGCTCCA 310624
Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916
| |||||||||||| | || ||
Sbjct 310625 CTTGGTGTTGCGCTTGCGAGGTGG 310648
>seq7
Length=770246
Score = 132 bits (146), Expect = 5e-26
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
||||| || ||||||||| | || || || || | |||| | | | |||| | ||||
Sbjct 134445 ACGGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACG-TGAAGGC 134503
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | || || ||||| ||||| |||| |||||||| || |||| |||||| ||
Sbjct 134504 GAAGATCCAAGATAAGGAGGGGATCCCGCCGGATCAGCAACGTCTGATCTTCGCGGGTAA 134563
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || |||| ||||| ||| ||||||||||||||| |||||| ||||||| ||
Sbjct 134564 GCAACTCGAGGACGGCCGCACGCTCGCCGACTACAACATCCAAAAGGAGTCCACGCTCCA 134623
Query 40893 TCTAGTGTTGCGCTTGAGGGGCGGCGG 40919
| |||||||||||| | || || ||
Sbjct 134624 CTTGGTGTTGCGCTTGCGCGGGGGTGG 134650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219071195200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |