Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq12 122 1e-22 seq8 84.2 3e-11 seq7 84.2 3e-11 >seq12 Length=542657 Score = 122 bits (134), Expect = 1e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || || | |||||| || | ||| |||||| || || ||||| || |||| ||| || Sbjct 189335 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189276 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || ||||||||||| ||||| || | || ||||| || | ||| | || ||| Sbjct 189275 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189216 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144 ||||| ||| || |||| ||| | | | ||||| || ||||| |||| ||| Sbjct 189215 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189157 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| |||||||| |||||||| || ||||||||||| Sbjct 189156 AATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || || | |||||| || | ||| |||||| || || ||||| || |||| ||| || Sbjct 189563 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189504 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || ||||||||||| ||||| || | || ||||| || | ||| | || ||| Sbjct 189503 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189444 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144 ||||| ||| || |||| ||| | | | ||||| || ||||| |||| ||| Sbjct 189443 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189385 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| |||||||| || ||||||||||| Sbjct 189384 AATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || || | |||||| || | ||| |||||| || || ||||| || |||| ||| || Sbjct 189791 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189732 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || ||||||||||| ||||| || | || ||||| || | ||| | || ||| Sbjct 189731 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189672 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144 ||||| ||| || |||| ||| | | | ||||| || ||||| |||| ||| Sbjct 189671 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189613 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| |||||||| || ||||||||||| Sbjct 189612 AATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 >seq8 Length=717457 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| || ||||||||||| || | || ||||||||| || |||||||| ||| Sbjct 310648 CCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCC 310589 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || |||||||| || ||||| || | || ||||| || | ||| Sbjct 310588 AACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGG 310529 Query 43077 ACGCTCTCCTTGTC 43090 | || |||||| || Sbjct 310528 ATGCCCTCCTTATC 310515 >seq7 Length=770246 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || ||||||||||| || | ||| ||||||||| || ||||| || || || || || Sbjct 134638 AAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGG 134579 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || || |||||||| ||||| || || || ||||| || | ||| | | |||| Sbjct 134578 CCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGGATCCCCTCC 134519 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || || ||| || || | ||| | | | ||||| || ||||| || | || Sbjct 134518 TTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGT 134460 Query 43145 GATGGTTTTGCCCGT 43159 |||||| || ||||| Sbjct 134459 GATGGTCTTACCCGT 134445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817457045600