Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq12 122 1e-22
seq8 84.2 3e-11
seq7 84.2 3e-11
>seq12
Length=542657
Score = 122 bits (134), Expect = 1e-22
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
|| || | |||||| || | ||| |||||| || || ||||| || |||| ||| ||
Sbjct 189335 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189276
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
|||| || ||||||||||| ||||| || | || ||||| || | ||| | || |||
Sbjct 189275 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189216
Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144
||||| ||| || |||| ||| | | | ||||| || ||||| |||| |||
Sbjct 189215 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189157
Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| |||||||| |||||||| || |||||||||||
Sbjct 189156 AATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118
Score = 118 bits (130), Expect = 1e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
|| || | |||||| || | ||| |||||| || || ||||| || |||| ||| ||
Sbjct 189563 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189504
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
|||| || ||||||||||| ||||| || | || ||||| || | ||| | || |||
Sbjct 189503 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189444
Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144
||||| ||| || |||| ||| | | | ||||| || ||||| |||| |||
Sbjct 189443 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189385
Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || ||||| |||||||| || |||||||||||
Sbjct 189384 AATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346
Score = 118 bits (130), Expect = 1e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
|| || | |||||| || | ||| |||||| || || ||||| || |||| ||| ||
Sbjct 189791 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189732
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
|||| || ||||||||||| ||||| || | || ||||| || | ||| | || |||
Sbjct 189731 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189672
Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144
||||| ||| || |||| ||| | | | ||||| || ||||| |||| |||
Sbjct 189671 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189613
Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || ||||| |||||||| || |||||||||||
Sbjct 189612 AATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574
>seq8
Length=717457
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||| || ||||||||||| || | || ||||||||| || |||||||| |||
Sbjct 310648 CCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCC 310589
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || || |||| || |||||||| || ||||| || | || ||||| || | |||
Sbjct 310588 AACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGG 310529
Query 43077 ACGCTCTCCTTGTC 43090
| || |||||| ||
Sbjct 310528 ATGCCCTCCTTATC 310515
>seq7
Length=770246
Score = 84.2 bits (92), Expect = 3e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
|| ||||||||||| || | ||| ||||||||| || ||||| || || || || ||
Sbjct 134638 AAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGG 134579
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
|||| || || |||||||| ||||| || || || ||||| || | ||| | | ||||
Sbjct 134578 CCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGGATCCCCTCC 134519
Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144
|| || ||| || || | ||| | | | ||||| || ||||| || | ||
Sbjct 134518 TTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGT 134460
Query 43145 GATGGTTTTGCCCGT 43159
|||||| || |||||
Sbjct 134459 GATGGTCTTACCCGT 134445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817457045600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |