Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 232 6e-56 seq8 118 9e-22 seq12 100 3e-16 >seq1 Length=1096037 Score = 232 bits (256), Expect = 6e-56 Identities = 633/955 (66%), Gaps = 22/955 (2%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || || | ||||| ||||| || || | ||||||||| ||||| || Sbjct 14734 GCGATGGAAGCCAAGTTGCACACGGCGGTTTCATCCGGGCTCGTGTACTCAACAATCTCT 14675 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || | ||| |||| |||||||| | || ||||| || || |||||| Sbjct 14674 GTGCACAAGTTGGAGGACTTGATCGTGCCGAGGTTTTGTTGGTTAGACTTGCGGTTGCAC 14615 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | |||||| |||||||||| || | || ||||| || || ||||||| ||| || | Sbjct 14614 GCATCCTTAAAGAGCATGTATGGGTTACCGGTCTCAACTTGGGACTCGAGGATGGCAAAC 14555 Query 23201 CACA-TAGTCTGAGCGTGAACACGTCGCACGTACC--TGCCTTCTTCCTCGTACTTTTGG 23257 || | | || ||||| | | ||| | |||| | || || | |||||||||| Sbjct 14554 CAAAGTTGT-TGAGCCTTGATG-GTCTT-CTTACCCTTACCCTCCGCTTCGTACTTTTCA 14498 Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 |||| | || ||||| |||| | ||||| | || || || | | |||| ||| Sbjct 14497 TACAGAGTTTCGAATTCCTCACCCCAGCAGTCAGACAATCCAGGGCACTCGTTCGGGCAC 14438 Query 23318 ATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTCATAAAAAGATCCGGTATCCAT 23374 || | |||| | | | || || ||||| ||||||| | || |||| Sbjct 14437 ATCAACGTCCA---TTCGCCGTTCGCCTCGACGCGCTTCATAAACAAGTCGTTCGTCCAC 14381 Query 23375 AGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCC 23434 || |||||||||| ||||| |||||| | ||||| || ||| |||||| ||| || Sbjct 14380 AGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTCCTTACCGTGGTTCTTACGCAAGTCA 14321 Query 23435 AAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTC 23494 | |||| || | ||| || ||||||||||||||||| | ||| ||||| ||| | | Sbjct 14320 AGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAACGCTCCCTTGCGC 14261 Query 23495 TTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACG 23554 ||| || || || || ||||| || ||||||| |||| |||| | |||||||| | | Sbjct 14260 TTACCACCACCTTGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCATCGGAATG 14201 Query 23555 AGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGA 23614 | ||||| |||| ||| ||| | || | | ||||| | | ||| Sbjct 14200 ATGCCGTTCGACGTTCCGTTGGTGCCTCGAATGTAAGAGCTCGTAGCTCGGATATCGTGG 14141 Query 23615 ACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCG 23674 | | ||||| || |||||| | ||||| || || |||||| | ||||| |||||| Sbjct 14140 ATGGACAAACCGATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCAGCGTGTCG 14081 Query 23675 TAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCT 23734 || |||||||||||| || || || | | |||||| |||||||| | |||| Sbjct 14080 TAAATGCCCTCGATGGAATCTTCCTTCATGCAAATCAAGAAGCACGAAGAAAGCTGCGGA 14021 Query 23735 TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG-ACAT 23793 || ||| | || ||||| ||||| |||||||| | || | |||| || Sbjct 14020 CGCGGGGTACCAGCGTTGAACAACGTCGGCGACGCGTGCGTCATCCAT-CGTTCGCTCAG 13962 Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTC-CTCTCCGTGTATACCGATGGCGACGC 23852 | | |||||| || || || || ||||| ||| ||| || ||||||| ||| | Sbjct 13961 CATGTGGTACGTATCAATCGCCTTTTCGATGTCGGTCT-TGTGGATGCCGATGGAGACAC 13903 Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGAC---GCCGTTAATTTTGAACAGATATG 23909 |||| | || | ||| || | |||||| ||| ||||| || |||| || | Sbjct 13902 GCATAAGCAAATGTTGCGGACGCTCGAC---GACCTTGCCGTCGATGCGCAACAAGTAGG 13846 Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCAC 23964 |||| | | |||||| || || || ||||| || | || |||||||||| ||| Sbjct 13845 AACGCTCAAGCGTTTTGAACCCGAAGTAGTCGTAATCGAAATCACGATCGTACAC 13791 Score = 141 bits (156), Expect = 8e-29 Identities = 337/502 (67%), Gaps = 13/502 (3%) Strand=Plus/Minus Query 22102 GGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACAT 22161 |||| ||| || || |||| ||||| | || |||| | ||| || || ||||| Sbjct 15722 GGTCGCGTCGACAGTGAACTTGATGGCATCCGCAGCCGCGCGAGAGCGCAGGTAGTACAT 15663 Query 22162 GCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACT 22221 ||| |||||||| ||| |||||||||||||||| || | || || | || || | Sbjct 15662 GCCGGTCTTCAGGCCCTTCTTCCACGCGTAAAAGTGCAAGGAGGTGAGCTTACCGCTGTT 15603 Query 22222 CGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281 ||| | ||||| ||| ||||| |||||| |||||| || ||||| |||| ||| || Sbjct 15602 CGGATCGCTCATGTGCACGTTGAAGGACTGAGACTGATCAATGAACGCGCCTCTATCCGC 15543 Query 22282 GGCCATATTTATCAATGTACGCAT--CGACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339 |||||| | | ||| | || | | | || ||||| || |||||||| | | | | Sbjct 15542 GGCCAT-GTCAACAA-GAACACGTTGCTTGATCTCCCACACCGTCTTGTAAATGTTCTTC 15485 Query 22340 ATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399 | | ||| || | | | || || ||||| ||||| || |||| | || Sbjct 15484 AAGTTGTCCGGAAT--GTCCAAGTCT-TGCACGGAACCGTTGTTCGAGATGAGCTCGTTC 15428 Query 22400 TTAA---TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456 || | || ||| ||||| || | | || | ||| | || || ||||| Sbjct 15427 TTCAGCTCCGGATC---CCACAGGCCAAGCTCAGTGAGATCAGACAACAAGTGCTGGTTC 15371 Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || || |||||| |||||||| |||||||| ||| ||||| || ||| |||| ||| Sbjct 15370 ACGACGGTAAACTCACCGGACAACACGCGGCGAGCGTAGATGTTCGACGTGTACGGCTCG 15311 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || | || ||||| || || || |||| || || |||||||||||||| || | || Sbjct 15310 AAGCACTCGTTGTTGCCAAGAATTTGAGACGTAGACGCGGTCGGCATCGGAGCGACGAGC 15251 Query 22577 AGCGAGTTTCTCAAGCCGTGCT 22598 | ||||| | | |||||||| Sbjct 15250 AAAGAGTTGCGAACGCCGTGCT 15229 >seq8 Length=717457 Score = 118 bits (130), Expect = 9e-22 Identities = 398/607 (66%), Gaps = 27/607 (4%) Strand=Plus/Minus Query 57820 CAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC 57879 ||||||||||||| | | ||||| |||||| ||||| | |||||| | Sbjct 90286 CAGAAATGTATTCCTTGTTGATCGACCAGTACGTCAAGGATCCGGCCGAGAAGAGCCACT 90227 Query 57880 TGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 ||||| ||| ||||| || || || ||| | |||||||| || ||| | | || Sbjct 90226 TGTTCCGCGCTATCGAGACCATCCCATGCG-TTAAGAAGAAGGCTGACTGGGCGTTGAAG 90168 Query 57939 TGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 ||||| | | ||| | | |||| |||||| | || | |||||||| | | || Sbjct 90167 TGGATTGA---CTCCAGCGACTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAG 90111 Query 57999 GGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||||| ||||| || || | | ||| | || | ||| | ||||| ||||| || || Sbjct 90110 GGTATCTTCTTCTCTGGTTCGTTCTGC-TCCATCTACTGGCTTAAGAAGCGCGGTCTTAT 90052 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || |||| || ||||||| | || || ||||| ||||| | || ||| || Sbjct 90051 GCCGGGTTTGACCTTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTT 89992 Query 58118 TGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA----TCTTG- 58172 ||| ||||| | ||| || || |||| || | || ||| || | || || Sbjct 89991 TGCTTGCCTCTTATAC---CAAATGCTCAACAA---CAAGCCGGA-CGAAGAAGTCGTGC 89939 Query 58173 --GACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGG 58230 | ||| ||||||| ||||| | |||||| || ||||| || ||| | || ||| Sbjct 89938 GTAAGATTGTCACCGAAGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCTTCCGT 89879 Query 58231 TGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACA 58290 || | | ||||||||| | | ||||| | |||||||| | || |||||| Sbjct 89878 GCGCGCTCGTTGGTATGAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGAC- 89820 Query 58291 GACTTTTGCTCGAACTGATTGGAGAGC---GTCATTACAACACGAAAAATCCGTTTGATT 58347 |||| | | | | |||| || | ||||||||| || |||||||| | Sbjct 89819 CACTTGTTCACCTCC--CTTGGTATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACT 89762 Query 58348 TTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAAT 58407 ||| | || ||||||||| | |||||||| ||||| ||||| || || |||||| Sbjct 89761 GGATGGAACTCATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAAT 89702 Query 58408 ATCAAAA 58414 | ||||| Sbjct 89701 ACCAAAA 89695 >seq12 Length=542657 Score = 100 bits (110), Expect = 3e-16 Identities = 268/401 (67%), Gaps = 13/401 (3%) Strand=Plus/Minus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||||||||||||||||||| | ||| || |||||| ||||||| || | || Sbjct 198468 CACGTGTTGGCGTTTTTCGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCGCGA 198409 Query 57747 TTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 || || || | ||||| | | |||||| ||| || |||||||||||| | || | Sbjct 198408 TT--CATGAGCGACGTGCAGCTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCGA 198351 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || ||||| ||||| || | || |||||| | ||||| || Sbjct 198350 TCGAGAACATTCACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGA-TCCG 198292 Query 57865 ACG-AGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCA 57923 | | ||||| | |||| ||| || | ||| |||| | | || | ||| ||| Sbjct 198291 AAGAAGAAATCCGAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGCGATGAAAGCA 198232 Query 57924 GAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCG 57983 || ||| | | | ||||| |||| | || | |||||||| ||||| | | Sbjct 198231 GACTGGGCGCTTCATTGGATCGGTAGCGAC---GCGAGCTTCGCCGAAAGGCTGGTGGGA 198175 Query 57984 TTCGCCGCCGTCGAAGGTATATTCTT--TTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 ||||| ||||||||| || ||||| | || || | ||| || || || ||| ||| Sbjct 198174 TTCGCGTGCGTCGAAGGAATCTTCTTCAGTGGGTCA-TTCTGC-GCCATCTTCTGGCTGA 198117 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 | || || || |||||| ||| | || || ||||||| Sbjct 198116 AAAAGCGAGGATTGATGCGCGGTTTAACCTTCTCCAACGAG 198076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || || || |||| || || | || Sbjct 189117 CATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTC 189176 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || |||||||||||| | ||||| || || Sbjct 189177 GGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189236 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||| | || ||||| || || ||| | || ||| | ||| || ||| || || Sbjct 189237 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189296 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || |||| || Sbjct 189297 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || || || || || || |||| || || | || Sbjct 189345 CATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTC 189404 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || |||||||||||| | ||||| || || Sbjct 189405 GGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189464 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||| | || ||||| || || ||| | || ||| | ||| || ||| || || Sbjct 189465 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189524 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || |||| || Sbjct 189525 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || || || || || || |||| || || | || Sbjct 189573 CATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTC 189632 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || |||||||||||| | ||||| || || Sbjct 189633 GGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189692 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||| | || ||||| || || ||| | || ||| | ||| || ||| || || Sbjct 189693 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189752 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || |||| || Sbjct 189753 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766288558400