Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 232 6e-56
seq8 118 9e-22
seq12 100 3e-16
>seq1
Length=1096037
Score = 232 bits (256), Expect = 6e-56
Identities = 633/955 (66%), Gaps = 22/955 (2%)
Strand=Plus/Minus
Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080
||||| || || | ||||| ||||| || || | ||||||||| ||||| ||
Sbjct 14734 GCGATGGAAGCCAAGTTGCACACGGCGGTTTCATCCGGGCTCGTGTACTCAACAATCTCT 14675
Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140
|| || | ||| |||| |||||||| | || ||||| || || ||||||
Sbjct 14674 GTGCACAAGTTGGAGGACTTGATCGTGCCGAGGTTTTGTTGGTTAGACTTGCGGTTGCAC 14615
Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200
| |||||| |||||||||| || | || ||||| || || ||||||| ||| || |
Sbjct 14614 GCATCCTTAAAGAGCATGTATGGGTTACCGGTCTCAACTTGGGACTCGAGGATGGCAAAC 14555
Query 23201 CACA-TAGTCTGAGCGTGAACACGTCGCACGTACC--TGCCTTCTTCCTCGTACTTTTGG 23257
|| | | || ||||| | | ||| | |||| | || || | ||||||||||
Sbjct 14554 CAAAGTTGT-TGAGCCTTGATG-GTCTT-CTTACCCTTACCCTCCGCTTCGTACTTTTCA 14498
Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317
|||| | || ||||| |||| | ||||| | || || || | | |||| |||
Sbjct 14497 TACAGAGTTTCGAATTCCTCACCCCAGCAGTCAGACAATCCAGGGCACTCGTTCGGGCAC 14438
Query 23318 ATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTCATAAAAAGATCCGGTATCCAT 23374
|| | |||| | | | || || ||||| ||||||| | || ||||
Sbjct 14437 ATCAACGTCCA---TTCGCCGTTCGCCTCGACGCGCTTCATAAACAAGTCGTTCGTCCAC 14381
Query 23375 AGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCC 23434
|| |||||||||| ||||| |||||| | ||||| || ||| |||||| ||| ||
Sbjct 14380 AGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTCCTTACCGTGGTTCTTACGCAAGTCA 14321
Query 23435 AAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTC 23494
| |||| || | ||| || ||||||||||||||||| | ||| ||||| ||| | |
Sbjct 14320 AGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAACGCTCCCTTGCGC 14261
Query 23495 TTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACG 23554
||| || || || || ||||| || ||||||| |||| |||| | |||||||| | |
Sbjct 14260 TTACCACCACCTTGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCATCGGAATG 14201
Query 23555 AGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGA 23614
| ||||| |||| ||| ||| | || | | ||||| | | |||
Sbjct 14200 ATGCCGTTCGACGTTCCGTTGGTGCCTCGAATGTAAGAGCTCGTAGCTCGGATATCGTGG 14141
Query 23615 ACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCG 23674
| | ||||| || |||||| | ||||| || || |||||| | ||||| ||||||
Sbjct 14140 ATGGACAAACCGATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCAGCGTGTCG 14081
Query 23675 TAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCT 23734
|| |||||||||||| || || || | | |||||| |||||||| | ||||
Sbjct 14080 TAAATGCCCTCGATGGAATCTTCCTTCATGCAAATCAAGAAGCACGAAGAAAGCTGCGGA 14021
Query 23735 TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG-ACAT 23793
|| ||| | || ||||| ||||| |||||||| | || | |||| ||
Sbjct 14020 CGCGGGGTACCAGCGTTGAACAACGTCGGCGACGCGTGCGTCATCCAT-CGTTCGCTCAG 13962
Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTC-CTCTCCGTGTATACCGATGGCGACGC 23852
| | |||||| || || || || ||||| ||| ||| || ||||||| ||| |
Sbjct 13961 CATGTGGTACGTATCAATCGCCTTTTCGATGTCGGTCT-TGTGGATGCCGATGGAGACAC 13903
Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGAC---GCCGTTAATTTTGAACAGATATG 23909
|||| | || | ||| || | |||||| ||| ||||| || |||| || |
Sbjct 13902 GCATAAGCAAATGTTGCGGACGCTCGAC---GACCTTGCCGTCGATGCGCAACAAGTAGG 13846
Query 23910 AACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCAC 23964
|||| | | |||||| || || || ||||| || | || |||||||||| |||
Sbjct 13845 AACGCTCAAGCGTTTTGAACCCGAAGTAGTCGTAATCGAAATCACGATCGTACAC 13791
Score = 141 bits (156), Expect = 8e-29
Identities = 337/502 (67%), Gaps = 13/502 (3%)
Strand=Plus/Minus
Query 22102 GGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACAT 22161
|||| ||| || || |||| ||||| | || |||| | ||| || || |||||
Sbjct 15722 GGTCGCGTCGACAGTGAACTTGATGGCATCCGCAGCCGCGCGAGAGCGCAGGTAGTACAT 15663
Query 22162 GCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACT 22221
||| |||||||| ||| |||||||||||||||| || | || || | || || |
Sbjct 15662 GCCGGTCTTCAGGCCCTTCTTCCACGCGTAAAAGTGCAAGGAGGTGAGCTTACCGCTGTT 15603
Query 22222 CGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281
||| | ||||| ||| ||||| |||||| |||||| || ||||| |||| ||| ||
Sbjct 15602 CGGATCGCTCATGTGCACGTTGAAGGACTGAGACTGATCAATGAACGCGCCTCTATCCGC 15543
Query 22282 GGCCATATTTATCAATGTACGCAT--CGACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339
|||||| | | ||| | || | | | || ||||| || |||||||| | | | |
Sbjct 15542 GGCCAT-GTCAACAA-GAACACGTTGCTTGATCTCCCACACCGTCTTGTAAATGTTCTTC 15485
Query 22340 ATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399
| | ||| || | | | || || ||||| ||||| || |||| | ||
Sbjct 15484 AAGTTGTCCGGAAT--GTCCAAGTCT-TGCACGGAACCGTTGTTCGAGATGAGCTCGTTC 15428
Query 22400 TTAA---TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456
|| | || ||| ||||| || | | || | ||| | || || |||||
Sbjct 15427 TTCAGCTCCGGATC---CCACAGGCCAAGCTCAGTGAGATCAGACAACAAGTGCTGGTTC 15371
Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516
|| || |||||| |||||||| |||||||| ||| ||||| || ||| |||| |||
Sbjct 15370 ACGACGGTAAACTCACCGGACAACACGCGGCGAGCGTAGATGTTCGACGTGTACGGCTCG 15311
Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576
|| | || ||||| || || || |||| || || |||||||||||||| || | ||
Sbjct 15310 AAGCACTCGTTGTTGCCAAGAATTTGAGACGTAGACGCGGTCGGCATCGGAGCGACGAGC 15251
Query 22577 AGCGAGTTTCTCAAGCCGTGCT 22598
| ||||| | | ||||||||
Sbjct 15250 AAAGAGTTGCGAACGCCGTGCT 15229
>seq8
Length=717457
Score = 118 bits (130), Expect = 9e-22
Identities = 398/607 (66%), Gaps = 27/607 (4%)
Strand=Plus/Minus
Query 57820 CAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC 57879
||||||||||||| | | ||||| |||||| ||||| | |||||| |
Sbjct 90286 CAGAAATGTATTCCTTGTTGATCGACCAGTACGTCAAGGATCCGGCCGAGAAGAGCCACT 90227
Query 57880 TGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938
||||| ||| ||||| || || || ||| | |||||||| || ||| | | ||
Sbjct 90226 TGTTCCGCGCTATCGAGACCATCCCATGCG-TTAAGAAGAAGGCTGACTGGGCGTTGAAG 90168
Query 57939 TGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998
||||| | | ||| | | |||| |||||| | || | |||||||| | | ||
Sbjct 90167 TGGATTGA---CTCCAGCGACTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAG 90111
Query 57999 GGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057
||||| ||||| || || | | ||| | || | ||| | ||||| ||||| || ||
Sbjct 90110 GGTATCTTCTTCTCTGGTTCGTTCTGC-TCCATCTACTGGCTTAAGAAGCGCGGTCTTAT 90052
Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117
||| || |||| || ||||||| | || || ||||| ||||| | || ||| ||
Sbjct 90051 GCCGGGTTTGACCTTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTT 89992
Query 58118 TGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA----TCTTG- 58172
||| ||||| | ||| || || |||| || | || ||| || | || ||
Sbjct 89991 TGCTTGCCTCTTATAC---CAAATGCTCAACAA---CAAGCCGGA-CGAAGAAGTCGTGC 89939
Query 58173 --GACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGG 58230
| ||| ||||||| ||||| | |||||| || ||||| || ||| | || |||
Sbjct 89938 GTAAGATTGTCACCGAAGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCTTCCGT 89879
Query 58231 TGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACA 58290
|| | | ||||||||| | | ||||| | |||||||| | || ||||||
Sbjct 89878 GCGCGCTCGTTGGTATGAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGAC- 89820
Query 58291 GACTTTTGCTCGAACTGATTGGAGAGC---GTCATTACAACACGAAAAATCCGTTTGATT 58347
|||| | | | | |||| || | ||||||||| || |||||||| |
Sbjct 89819 CACTTGTTCACCTCC--CTTGGTATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACT 89762
Query 58348 TTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAAT 58407
||| | || ||||||||| | |||||||| ||||| ||||| || || ||||||
Sbjct 89761 GGATGGAACTCATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAAT 89702
Query 58408 ATCAAAA 58414
| |||||
Sbjct 89701 ACCAAAA 89695
>seq12
Length=542657
Score = 100 bits (110), Expect = 3e-16
Identities = 268/401 (67%), Gaps = 13/401 (3%)
Strand=Plus/Minus
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||||||||||||||||||| | ||| || |||||| ||||||| || | ||
Sbjct 198468 CACGTGTTGGCGTTTTTCGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCGCGA 198409
Query 57747 TTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
|| || || | ||||| | | |||||| ||| || |||||||||||| | || |
Sbjct 198408 TT--CATGAGCGACGTGCAGCTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCGA 198351
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864
| || ||| | || || ||||| ||||| || | || |||||| | ||||| ||
Sbjct 198350 TCGAGAACATTCACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGA-TCCG 198292
Query 57865 ACG-AGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCA 57923
| | ||||| | |||| ||| || | ||| |||| | | || | ||| |||
Sbjct 198291 AAGAAGAAATCCGAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGCGATGAAAGCA 198232
Query 57924 GAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCG 57983
|| ||| | | | ||||| |||| | || | |||||||| ||||| | |
Sbjct 198231 GACTGGGCGCTTCATTGGATCGGTAGCGAC---GCGAGCTTCGCCGAAAGGCTGGTGGGA 198175
Query 57984 TTCGCCGCCGTCGAAGGTATATTCTT--TTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041
||||| ||||||||| || ||||| | || || | ||| || || || ||| |||
Sbjct 198174 TTCGCGTGCGTCGAAGGAATCTTCTTCAGTGGGTCA-TTCTGC-GCCATCTTCTGGCTGA 198117
Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082
| || || || |||||| ||| | || || |||||||
Sbjct 198116 AAAAGCGAGGATTGATGCGCGGTTTAACCTTCTCCAACGAG 198076
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| || || ||||| || || || |||| || || | ||
Sbjct 189117 CATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTC 189176
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || || |||||||||||| | ||||| || ||
Sbjct 189177 GGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189236
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| ||| | || ||||| || || ||| | || ||| | ||| || ||| || ||
Sbjct 189237 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189296
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || |||| ||
Sbjct 189297 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189329
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| || || || || || || || |||| || || | ||
Sbjct 189345 CATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTC 189404
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || || |||||||||||| | ||||| || ||
Sbjct 189405 GGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189464
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| ||| | || ||||| || || ||| | || ||| | ||| || ||| || ||
Sbjct 189465 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189524
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || |||| ||
Sbjct 189525 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189557
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| || || || || || || || |||| || || | ||
Sbjct 189573 CATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTC 189632
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || || |||||||||||| | ||||| || ||
Sbjct 189633 GGACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCA 189692
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| ||| | || ||||| || || ||| | || ||| | ||| || ||| || ||
Sbjct 189693 GCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAA 189752
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || |||| ||
Sbjct 189753 CATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766288558400
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