Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 123 5e-23 >seq1 Length=1096037 Score = 123 bits (136), Expect = 5e-23 Identities = 409/622 (66%), Gaps = 13/622 (2%) Strand=Plus/Plus Query 35096 GAACATCAATATTTGAACCTAGTCAGGGAGATCCTAGAAAGAGGAGTGAAGAAGGACGAT 35155 || |||||||| ||| || | | || || ||| | || ||||| | ||||| ||| Sbjct 960890 GAGCATCAATACTTGGACATGATTAGAGAAATCATCGACCAAGGAGCGGTGAAGGGAGAT 960949 Query 35156 AGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGAC 35215 | || || ||||| || | || | || || ||| ||| | ||| ||| || | Sbjct 960950 CGCACCGGTACAGGTACGATTTCTACCTTCGGCAACCAGATGCGATTCGATCTGCGT--C 961007 Query 35216 GACACTATTCCAGTTCTC-ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACT 35274 | | | |||| | ||| || |||||| |||||||| |||| || | || || || Sbjct 961008 G-CTCG-TTCCCGCTCTTGACGACCAAGCGTGTTTTCTGGCGAGGCGTCGCCGAGGAGCT 961065 Query 35275 CTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACAT 35334 | |||||| | |||| | || | || || | ||||| |||||||||| |||| Sbjct 961066 GTTATGGTTCGTGGCGGGCGAGACCAATGCGAACAAGTTGGCAGAGAAGAAGATCAACAT 961125 Query 35335 CTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGA 35394 |||| ||| || || || || | ||||||| | ||||| ||| | | | Sbjct 961126 CTGGGACGGCAACGGAAGCCGAGAGTATTTGGACTCCATCGGGTTGACCGAGCGCGAGGT 961185 Query 35395 GGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT--GAT 35452 ||| ||| | || ||||| ||||| ||||||||| | || ||||| || ||||| || Sbjct 961186 GGGTGATCTCGGCCCCGTTTACGGTTTCCAATGGAGACACTTTGGCGCCGAATACACGA- 961244 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 || || | |||| || || || ||||| |||||||||||||| | | | || | Sbjct 961245 ACATGCACG-CCGACTACACGGGCAAGGGCGTTGATCAATTGGCCGAGGTTATCAACAAG 961303 Query 35513 CTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 | | |||| ||||| ||| | | || | | || ||||||||||| | || Sbjct 961304 ATCA-AGAATAATCCGACCGATCGTCGCATCTTACTTACAGCATGGAATCCGGCAGCGCT 961362 Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAG 35630 | |||||||| || || ||||||||| |||| || || || || || || || | Sbjct 961363 AAAGGAAATGGCTCTGCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTCGCCAACGGCG 961421 Query 35631 AATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATA 35690 ||||| ||||| |||| ||||| | || | || | ||||| || ||||| | Sbjct 961422 AATTGAGCTGCCAAATGTACCAGCGCTCGTGCGACATGGGTCTCGGCGTCCCGTTCAACA 961481 Query 35691 TTGCATCATACTCTCTTCTGAC 35712 | || || ||||| || || || Sbjct 961482 TCGCGTCGTACTCCCTGCTCAC 961503 Score = 104 bits (114), Expect = 5e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94183 GCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCA 94242 ||||| |||||||| |||||||| || ||||| |||| |||||| ||||| || Sbjct 14734 GCGATGGAAGCCAAGTTGCACACGGCGGTTTCATCCGGGCTCGTGTACTCAACAATCTCT 14675 Query 94243 GTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATG 94302 |||||||| || || |||||||| |||||| |||| |||||||||||| | ||| Sbjct 14674 GTGCACAAGTTGGAGGACTTGATCGTGCCGAGGTTTTGTTGGTTAGACTTGCGGTTGCAC 14615 Query 94303 GTATCCTTAAAG 94314 | |||||||||| Sbjct 14614 GCATCCTTAAAG 14603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583746419100