Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 5e-23
>seq1
Length=1096037
Score = 123 bits (136), Expect = 5e-23
Identities = 409/622 (66%), Gaps = 13/622 (2%)
Strand=Plus/Plus
Query 35096 GAACATCAATATTTGAACCTAGTCAGGGAGATCCTAGAAAGAGGAGTGAAGAAGGACGAT 35155
|| |||||||| ||| || | | || || ||| | || ||||| | ||||| |||
Sbjct 960890 GAGCATCAATACTTGGACATGATTAGAGAAATCATCGACCAAGGAGCGGTGAAGGGAGAT 960949
Query 35156 AGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGAC 35215
| || || ||||| || | || | || || ||| ||| | ||| ||| || |
Sbjct 960950 CGCACCGGTACAGGTACGATTTCTACCTTCGGCAACCAGATGCGATTCGATCTGCGT--C 961007
Query 35216 GACACTATTCCAGTTCTC-ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACT 35274
| | | |||| | ||| || |||||| |||||||| |||| || | || || ||
Sbjct 961008 G-CTCG-TTCCCGCTCTTGACGACCAAGCGTGTTTTCTGGCGAGGCGTCGCCGAGGAGCT 961065
Query 35275 CTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACAT 35334
| |||||| | |||| | || | || || | ||||| |||||||||| ||||
Sbjct 961066 GTTATGGTTCGTGGCGGGCGAGACCAATGCGAACAAGTTGGCAGAGAAGAAGATCAACAT 961125
Query 35335 CTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGA 35394
|||| ||| || || || || | ||||||| | ||||| ||| | | |
Sbjct 961126 CTGGGACGGCAACGGAAGCCGAGAGTATTTGGACTCCATCGGGTTGACCGAGCGCGAGGT 961185
Query 35395 GGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT--GAT 35452
||| ||| | || ||||| ||||| ||||||||| | || ||||| || ||||| ||
Sbjct 961186 GGGTGATCTCGGCCCCGTTTACGGTTTCCAATGGAGACACTTTGGCGCCGAATACACGA- 961244
Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512
|| || | |||| || || || ||||| |||||||||||||| | | | || |
Sbjct 961245 ACATGCACG-CCGACTACACGGGCAAGGGCGTTGATCAATTGGCCGAGGTTATCAACAAG 961303
Query 35513 CTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571
| | |||| ||||| ||| | | || | | || ||||||||||| | ||
Sbjct 961304 ATCA-AGAATAATCCGACCGATCGTCGCATCTTACTTACAGCATGGAATCCGGCAGCGCT 961362
Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAG 35630
| |||||||| || || ||||||||| |||| || || || || || || || |
Sbjct 961363 AAAGGAAATGGCTCTGCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTCGCCAACGGCG 961421
Query 35631 AATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATA 35690
||||| ||||| |||| ||||| | || | || | ||||| || ||||| |
Sbjct 961422 AATTGAGCTGCCAAATGTACCAGCGCTCGTGCGACATGGGTCTCGGCGTCCCGTTCAACA 961481
Query 35691 TTGCATCATACTCTCTTCTGAC 35712
| || || ||||| || || ||
Sbjct 961482 TCGCGTCGTACTCCCTGCTCAC 961503
Score = 104 bits (114), Expect = 5e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 94183 GCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCA 94242
||||| |||||||| |||||||| || ||||| |||| |||||| ||||| ||
Sbjct 14734 GCGATGGAAGCCAAGTTGCACACGGCGGTTTCATCCGGGCTCGTGTACTCAACAATCTCT 14675
Query 94243 GTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATG 94302
|||||||| || || |||||||| |||||| |||| |||||||||||| | |||
Sbjct 14674 GTGCACAAGTTGGAGGACTTGATCGTGCCGAGGTTTTGTTGGTTAGACTTGCGGTTGCAC 14615
Query 94303 GTATCCTTAAAG 94314
| ||||||||||
Sbjct 14614 GCATCCTTAAAG 14603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583746419100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |