Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 2e-12 >seq12 Length=542657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 363/562 (65%), Gaps = 12/562 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||| |||||||||| || ||||||| || || | ||||| || | Sbjct 198027 ACAGCAAGCAAGCGAAGTCGCAGTGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGA 198086 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | ||| |||| | || |||||||| ||||| || |||| |||||| || Sbjct 198087 AGGTTAAACCGCGCATCAATCCTCGCTTTTTCAGCCAGAAGATGGCGCAGAATGACCCAC 198146 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 |||||||||||||| || ||| || || | | || || || | | | ||| | Sbjct 198147 TGAAGAAGATTCCTTCGAC-GCACGCGAATCCCACCAGCCTTTCGGCGAAGCTCGCGTCG 198205 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 | ||||| | | ||||| || || ||| | ||| |||| || | ||| Sbjct 198206 CTACCGATCCAATGAAGCGCCCAGTCTGCTTTCATCGCCACAGTCGGCACTGTGTGAATG 198265 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG--AC 33870 || ||| | | | ||| | || ||| || | || || || |||||| | Sbjct 198266 GCGCGAAACAATTCGGATTTCTTCTTCGGATCCTTGATGTACGTGTC---CAAAAGCAGC 198322 Query 33871 TA-TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 | ||||| || |||||||| || || || | |||||||||||||| ||| ||| Sbjct 198323 GAGTACATCTCGCTGTGAATGTTCTCGATCGCGAGTTGAAATCCGTAGAACGATCGCGCC 198382 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || | || |||||| || | ||||| | ||| || || || || || Sbjct 198383 TCTGGAAGCTGCACGTCGCTCATGAATCGCGAGCACAGATTCTCGAGAACAATGCCGTCG 198442 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTAGTTT 34048 || | || ||||||||||| || || | || | || ||| ||| || | || | Sbjct 198443 CTCGAGGCGAAAAACGCCAACACGTGAGACACGAAGTGCTTCTCGTTCTCGT-TCAGCGT 198501 Query 34049 ATTCCAATCATTGATA-TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 | |||||| || ||| || | | | ||| || || ||| | |||||||| |||| Sbjct 198502 CTGCCAATCCTT-ATAGTCGTACGTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCT 198560 Query 34108 CTGCCTTTTTATACATATTCCA 34129 | ||||| |||||||| | ||| Sbjct 198561 CCGCCTTCTTATACATCTCCCA 198582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817442545600