Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 152 8e-32 seq12 118 2e-21 seq8 96.9 5e-15 >seq1 Length=1096037 Score = 152 bits (168), Expect = 8e-32 Identities = 424/628 (68%), Gaps = 17/628 (3%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTT-TGTCAAGGGCGTCATCGAGGAGCTCTTGTGGAT 69954 || || |||||||||||| ||| || || | | |||||| ||||||||| || ||| | Sbjct 961016 CCGCTCTTGACGACCAAGCGTGTTTTCTGGCGA-GGCGTCGCCGAGGAGCTGTTATGGTT 961074 Query 69955 GATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCG 70013 | | || ||||||||| || || || || || ||| | |||| ||| || Sbjct 961075 CGTGGCGGGCGAGACCAATGCGAACAAGTTG-GCAGAGAAGAAGATCAACATCTGGGACG 961133 Query 70014 GCAACAGTAGTCGAAGCGT-TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGAT 70072 ||||| | || || || || |||||| || |||| || ||||| | | | ||| ||| Sbjct 961134 GCAACGGAAGCCG-AGAGTATTTGGACTCCATCGGGTTGACCGAGCGCGAGGTGGGTGAT 961192 Query 70073 CTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGA 70131 || || || || ||||| ||||| ||||| |||| ||| || | || || ||| | Sbjct 961193 CTCGGCCCCGTTTACGGTTTCCAATGGAGACACTTTGGCGCCGAATACACGAACATGC-A 961251 Query 70132 GACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTCTCAAGA 70190 | ||||| |||| |||| ||||||||||| || || | || ||| |||||| Sbjct 961252 CGCCGACTACACGGGCAAGGGCGTTGATCAATTGGCCGA-GGTTATCAACAAGATCAAGA 961310 Query 70191 CCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAA 70250 ||||| || ||| | | ||| || | |||||||||| |||| | | ||| Sbjct 961311 ATAATCCGACCGATCGTCGCATCTTACTTACAGCATGGAATCCGGCAGCGCTAAAGGAAA 961370 Query 70251 TGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGTC 70308 |||| || || ||||| ||| |||| || ||||| ||| ||| | | ||| ||||| Sbjct 961371 TGGCTCTGCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTCG-CCAACGGCGAATTGAG 961428 Query 70309 ATGCTTAATGTATCAGAG-GAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAA 70367 ||| |||||| ||| | ||| ||||||||| ||||| || || || ||||| || Sbjct 961429 CTGCCAAATGTACCAGCGCTCGTG-CGACATGGGTCTCGGCGTCCCGTTCAACATCGCGT 961487 Query 70368 GCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCG 70427 || || || | || |||||| || || | || ||| || | ||| |||| Sbjct 961488 CGTACTCCCTGCTCACCTGCATGATCGCGCAAGTGTGCGACCTCAAGCCTGGCGATTTCG 961547 Query 70428 TACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAAC 70487 | ||| ||| ||| | |||||||| | ||| || |||| || | ||| ||||| Sbjct 961548 TCCACGTTTGTGGAGACACGCACGTGTACTCAAACCATGTCGAACCGCTGAAGAAGCAAC 961607 Query 70488 TCGAACGGGAGCCGAGACCTTTTCCCAA 70515 || | | |||||| | || ||||||| Sbjct 961608 TCACATGCGAGCCGCGGCC-GTTCCCAA 961634 >seq12 Length=542657 Score = 118 bits (130), Expect = 2e-21 Identities = 362/555 (65%), Gaps = 10/555 (2%) Strand=Plus/Minus Query 125020 TTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGT 125079 ||||||| ||||| || ||||| |||| ||||||||||| || ||||| ||| || Sbjct 198584 TTTGGGAGATGTATAAGAAGGCGGAGGCGAGCTTTTGGACGGCGGAGGAGGTTGATTTGA 198525 Query 125080 CCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGC 125139 | | ||| | |||||| |||| | ||| || | ||| | || | || | Sbjct 198524 CGTACGACTATAAGGATTGGCAGACGC---TGAACGAGAACGAGAAGCACTTCGTGTCTC 198468 Query 125140 ACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGAT 125199 || | ||||| || || ||| ||| || || || ||| ||||||| | |||| Sbjct 198467 ACGTGTTGGCGTTTTTCGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCGCGAT 198408 Query 125200 TCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTG 125259 || || || ||||||||| | | || |||||||| ||| || ||| | Sbjct 198407 TCATGAGCGACGTGCAGCTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCGATCG 198348 Query 125260 AGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAAC 125319 ||||| | ||| || |||||||| || | |||| |||||| |||||| | Sbjct 198347 AGAACATTCACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGATCCGAAGA 198288 Query 125320 GTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAAT 125379 ||| | | ||| ||| || |||| |||||| || | | || || | | Sbjct 198287 AGAAATCCGAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGCGATGAAAGCAGACT 198228 Query 125380 GGGTGATTCGGTGGATCGATGACGACAAG-TCTTCGTACGCCGACAGACTGGTGGCATTC 125438 ||| | ||| ||||||| | |||| | ||| |||||| || ||||||| |||| Sbjct 198227 GGGCGCTTCATTGGATCGGTAGCGACGCGAGCTT----CGCCGAAAGGCTGGTGGGATTC 198172 Query 125439 GCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 || ||| || || |||||||| |||| || ||| |||||||| ||||| || || Sbjct 198171 GCGTGCGTCGAAGGAATCTTCTTCAGTGGGTCATTCTGC-GCCATCTTCTGGCTGAAAAA 198113 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 ||| ||| | |||| ||| | || | |||||| | || |||||||| ||| | Sbjct 198112 GCGAGGATTGATGCGCGGTTTAACCTTCTCCAACGAGCTCATCAGCCGAGACGAAGGCTT 198053 Query 125558 ACACTGTGACTTTGC 125572 ||||| ||||| || Sbjct 198052 GCACTGCGACTTCGC 198038 >seq8 Length=717457 Score = 96.9 bits (106), Expect = 5e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA-G 125470 |||| ||||| | ||| |||| ||||| | | ||||| |||||||| || ||| | Sbjct 90149 TCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTATCTTCTTCTCTGGTTCG 90090 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || ||| |||||| ||||| ||||||||||| || ||||| || |||| | || Sbjct 90089 TTCTGCT-CCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCGGGTTTGACCTTCTCCAA 90031 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||| | || ||||| || |||||| | ||| |||||||||| Sbjct 90030 CGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTTGC 89989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059014735200