Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1 152 8e-32
seq12 118 2e-21
seq8 96.9 5e-15
>seq1
Length=1096037
Score = 152 bits (168), Expect = 8e-32
Identities = 424/628 (68%), Gaps = 17/628 (3%)
Strand=Plus/Plus
Query 69896 CCTCTGTTGACGACCAAGACTGTCTT-TGTCAAGGGCGTCATCGAGGAGCTCTTGTGGAT 69954
|| || |||||||||||| ||| || || | | |||||| ||||||||| || ||| |
Sbjct 961016 CCGCTCTTGACGACCAAGCGTGTTTTCTGGCGA-GGCGTCGCCGAGGAGCTGTTATGGTT 961074
Query 69955 GATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCG 70013
| | || ||||||||| || || || || || ||| | |||| ||| ||
Sbjct 961075 CGTGGCGGGCGAGACCAATGCGAACAAGTTG-GCAGAGAAGAAGATCAACATCTGGGACG 961133
Query 70014 GCAACAGTAGTCGAAGCGT-TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGAT 70072
||||| | || || || || |||||| || |||| || ||||| | | | ||| |||
Sbjct 961134 GCAACGGAAGCCG-AGAGTATTTGGACTCCATCGGGTTGACCGAGCGCGAGGTGGGTGAT 961192
Query 70073 CTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGA 70131
|| || || || ||||| ||||| ||||| |||| ||| || | || || ||| |
Sbjct 961193 CTCGGCCCCGTTTACGGTTTCCAATGGAGACACTTTGGCGCCGAATACACGAACATGC-A 961251
Query 70132 GACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTCTCAAGA 70190
| ||||| |||| |||| ||||||||||| || || | || ||| ||||||
Sbjct 961252 CGCCGACTACACGGGCAAGGGCGTTGATCAATTGGCCGA-GGTTATCAACAAGATCAAGA 961310
Query 70191 CCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAA 70250
||||| || ||| | | ||| || | |||||||||| |||| | | |||
Sbjct 961311 ATAATCCGACCGATCGTCGCATCTTACTTACAGCATGGAATCCGGCAGCGCTAAAGGAAA 961370
Query 70251 TGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGTC 70308
|||| || || ||||| ||| |||| || ||||| ||| ||| | | ||| |||||
Sbjct 961371 TGGCTCTGCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTCG-CCAACGGCGAATTGAG 961428
Query 70309 ATGCTTAATGTATCAGAG-GAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAA 70367
||| |||||| ||| | ||| ||||||||| ||||| || || || ||||| ||
Sbjct 961429 CTGCCAAATGTACCAGCGCTCGTG-CGACATGGGTCTCGGCGTCCCGTTCAACATCGCGT 961487
Query 70368 GCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCG 70427
|| || || | || |||||| || || | || ||| || | ||| ||||
Sbjct 961488 CGTACTCCCTGCTCACCTGCATGATCGCGCAAGTGTGCGACCTCAAGCCTGGCGATTTCG 961547
Query 70428 TACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAAC 70487
| ||| ||| ||| | |||||||| | ||| || |||| || | ||| |||||
Sbjct 961548 TCCACGTTTGTGGAGACACGCACGTGTACTCAAACCATGTCGAACCGCTGAAGAAGCAAC 961607
Query 70488 TCGAACGGGAGCCGAGACCTTTTCCCAA 70515
|| | | |||||| | || |||||||
Sbjct 961608 TCACATGCGAGCCGCGGCC-GTTCCCAA 961634
>seq12
Length=542657
Score = 118 bits (130), Expect = 2e-21
Identities = 362/555 (65%), Gaps = 10/555 (2%)
Strand=Plus/Minus
Query 125020 TTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGT 125079
||||||| ||||| || ||||| |||| ||||||||||| || ||||| ||| ||
Sbjct 198584 TTTGGGAGATGTATAAGAAGGCGGAGGCGAGCTTTTGGACGGCGGAGGAGGTTGATTTGA 198525
Query 125080 CCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGC 125139
| | ||| | |||||| |||| | ||| || | ||| | || | || |
Sbjct 198524 CGTACGACTATAAGGATTGGCAGACGC---TGAACGAGAACGAGAAGCACTTCGTGTCTC 198468
Query 125140 ACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGAT 125199
|| | ||||| || || ||| ||| || || || ||| ||||||| | ||||
Sbjct 198467 ACGTGTTGGCGTTTTTCGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCGCGAT 198408
Query 125200 TCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTG 125259
|| || || ||||||||| | | || |||||||| ||| || ||| |
Sbjct 198407 TCATGAGCGACGTGCAGCTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCGATCG 198348
Query 125260 AGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAAC 125319
||||| | ||| || |||||||| || | |||| |||||| |||||| |
Sbjct 198347 AGAACATTCACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGATCCGAAGA 198288
Query 125320 GTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAAT 125379
||| | | ||| ||| || |||| |||||| || | | || || | |
Sbjct 198287 AGAAATCCGAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGCGATGAAAGCAGACT 198228
Query 125380 GGGTGATTCGGTGGATCGATGACGACAAG-TCTTCGTACGCCGACAGACTGGTGGCATTC 125438
||| | ||| ||||||| | |||| | ||| |||||| || ||||||| ||||
Sbjct 198227 GGGCGCTTCATTGGATCGGTAGCGACGCGAGCTT----CGCCGAAAGGCTGGTGGGATTC 198172
Query 125439 GCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497
|| ||| || || |||||||| |||| || ||| |||||||| ||||| || ||
Sbjct 198171 GCGTGCGTCGAAGGAATCTTCTTCAGTGGGTCATTCTGC-GCCATCTTCTGGCTGAAAAA 198113
Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557
||| ||| | |||| ||| | || | |||||| | || |||||||| ||| |
Sbjct 198112 GCGAGGATTGATGCGCGGTTTAACCTTCTCCAACGAGCTCATCAGCCGAGACGAAGGCTT 198053
Query 125558 ACACTGTGACTTTGC 125572
||||| ||||| ||
Sbjct 198052 GCACTGCGACTTCGC 198038
>seq8
Length=717457
Score = 96.9 bits (106), Expect = 5e-15
Identities = 120/162 (74%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA-G 125470
|||| ||||| | ||| |||| ||||| | | ||||| |||||||| || ||| |
Sbjct 90149 TCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTATCTTCTTCTCTGGTTCG 90090
Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530
|| ||| |||||| ||||| ||||||||||| || ||||| || |||| | ||
Sbjct 90089 TTCTGCT-CCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCGGGTTTGACCTTCTCCAA 90031
Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572
|||| | || ||||| || |||||| | ||| ||||||||||
Sbjct 90030 CGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTTGC 89989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741059014735200
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