Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq20 89.7 4e-13 >seq8 Length=717457 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||||||| | ||||||| ||| | ||||||||||||||| || |||||||||||| Sbjct 310648 CCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCC 310589 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||| || ||||| |||| | | ||||||||| || Sbjct 310588 AACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGG 310529 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||| || || || ||| || || | | ||| || || | ||| |||| Sbjct 310528 ATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTC-CGAGGACTCCAC 310470 Query 18994 TTCGACGGTAATGGTTTTACCTGT 19017 || | ||| ||||| ||||| || Sbjct 310469 CTCCAAGGTGATGGTCTTACCAGT 310446 >seq20 Length=165357 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/140 (76%), Gaps = 8/140 (6%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGC-GTCGGGAGCGCCGTGAT---TTT 21193 |||||| || |||||||| |||| ||| | || | ||||| |||||||||| | | Sbjct 75706 GACGTTTCCGAGATCGCCCGCGTGTCGCACCGCATCCGTCGGC-GCGCCGTGATCCATCT 75764 Query 21194 GGTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACT 21253 || || ||||||||||| || | |||| |||| ||||| ||||||| ||||||| Sbjct 75765 TGTTCG---GGTTAAAGTGCGGTCCCGTGGACATGCACCCGTTCGTGGTGTCACCGAACT 75821 Query 21254 CGTGAACGTGAAAGCCGTGC 21273 |||||| ||| || |||||| Sbjct 75822 CGTGAATGTGCAAACCGTGC 75841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572698947880