Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq17 149 5e-31
>seq17
Length=411047
Score = 149 bits (164), Expect = 5e-31
Identities = 262/373 (70%), Gaps = 8/373 (2%)
Strand=Plus/Plus
Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCAC-CT 5558
|||||||||||||||||| ||||| |||||||| ||| ||||| || | | | | ||
Sbjct 393621 CACGCCCGTGGACCCGAACCCGCCGGCGCCTCTGGTCGTGTCGTCGAG-CTCTTCGCACT 393679
Query 5559 CTTCCACATCGGGGA--ACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGT 5616
| | ||||| ||| ||| | | ||||| ||| |||||||| | || |||||| |
Sbjct 393680 CGACGACATCCGGGGTGACG-ATCT-GCTCGAGGATGAGCTGCGCCACGCGATCGCCCTT 393737
Query 5617 CTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTA 5676
||| || ||||||| || | ||| |||||||| | || || ||||| ||||||||
Sbjct 393738 CTTCACGACGAAATCATTCTCACCGTGGTTGAACAAAATAACTCCGACGTTTCCGCGGTA 393797
Query 5677 GTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCG 5736
|||| || | ||| || ||||| |||||||||||| ||| ||||| ||| |||||
Sbjct 393798 GTCGTAATCCACCACCCCGGCGCCGACGTCGATGAAGGACTTCCACGCCAAGCCCGAGCG 393857
Query 5737 GGGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCAC 5796
|| || ||||| |||| ||| || |||| | | | | |||||| |||||
Sbjct 393858 AGGCGCGACGCGCGCGTACGTCCCCTCCGGAATCGCCACCGAGATGTCCGTCTTCACCAA 393917
Query 5797 TCGCCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGC 5856
| | |||| ||| || |||| | | || | || | | ||||||||||||||
Sbjct 393918 TTCCTTCCCGCGCGCCGGAACGACGTAATCATACGCCGACGACAAATCGTACCCGGCCGC 393977
Query 5857 -CCGCGGGGACCC 5868
|||| ||||||
Sbjct 393978 ACCGC-TGGACCC 393989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430054295174240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |