Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq17 149 5e-31 >seq17 Length=411047 Score = 149 bits (164), Expect = 5e-31 Identities = 262/373 (70%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCAC-CT 5558 |||||||||||||||||| ||||| |||||||| ||| ||||| || | | | | || Sbjct 393621 CACGCCCGTGGACCCGAACCCGCCGGCGCCTCTGGTCGTGTCGTCGAG-CTCTTCGCACT 393679 Query 5559 CTTCCACATCGGGGA--ACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGT 5616 | | ||||| ||| ||| | | ||||| ||| |||||||| | || |||||| | Sbjct 393680 CGACGACATCCGGGGTGACG-ATCT-GCTCGAGGATGAGCTGCGCCACGCGATCGCCCTT 393737 Query 5617 CTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTA 5676 ||| || ||||||| || | ||| |||||||| | || || ||||| |||||||| Sbjct 393738 CTTCACGACGAAATCATTCTCACCGTGGTTGAACAAAATAACTCCGACGTTTCCGCGGTA 393797 Query 5677 GTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCG 5736 |||| || | ||| || ||||| |||||||||||| ||| ||||| ||| ||||| Sbjct 393798 GTCGTAATCCACCACCCCGGCGCCGACGTCGATGAAGGACTTCCACGCCAAGCCCGAGCG 393857 Query 5737 GGGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCAC 5796 || || ||||| |||| ||| || |||| | | | | |||||| ||||| Sbjct 393858 AGGCGCGACGCGCGCGTACGTCCCCTCCGGAATCGCCACCGAGATGTCCGTCTTCACCAA 393917 Query 5797 TCGCCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGC 5856 | | |||| ||| || |||| | | || | || | | |||||||||||||| Sbjct 393918 TTCCTTCCCGCGCGCCGGAACGACGTAATCATACGCCGACGACAAATCGTACCCGGCCGC 393977 Query 5857 -CCGCGGGGACCC 5868 |||| |||||| Sbjct 393978 ACCGC-TGGACCC 393989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054295174240