Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 172 9e-39 seq11 167 4e-37 >seq1 Length=1096037 Score = 172 bits (190), Expect = 9e-39 Identities = 186/244 (76%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || ||||| ||||| ||||| ||||| || | Sbjct 1039432 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATTCAAGGCATCACGAAGCCGGCGA 1039374 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||| |||||||| |||||||| ||||||| | |||| ||||||| Sbjct 1039373 TCCGACGCTTGGCTCGCCGTGGTGGTGTCAAGCGCATCTCTGGTCTCATCTACGAAGAGA 1039314 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | |||||| ||| ||| |||| |||||| | ||| |||| Sbjct 1039313 CCCGAGGCGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTGACCTACACCG 1039254 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| | ||||| |||||| |||||||| ||||||| || | || || |||| Sbjct 1039253 AGCACGCTCGCAGAAAGACGGTCACCGCCATGGATGTCGTCTACGCGCTCAAGCGCCAAG 1039194 Query 16671 GCCG 16674 |||| Sbjct 1039193 GCCG 1039190 Score = 172 bits (190), Expect = 9e-39 Identities = 186/244 (76%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || ||||| ||||| ||||| ||||| || | Sbjct 1039837 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATTCAAGGCATCACGAAGCCGGCGA 1039895 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||| |||||||| |||||||| ||||||| | |||| ||||||| Sbjct 1039896 TCCGACGCTTGGCTCGCCGTGGTGGTGTCAAGCGCATCTCTGGTCTCATCTACGAAGAGA 1039955 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | |||||| ||| ||| |||| |||||| | ||| |||| Sbjct 1039956 CCCGAGGCGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTGACCTACACCG 1040015 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| | ||||| |||||| |||||||| ||||||| || | || || |||| Sbjct 1040016 AGCACGCTCGCAGAAAGACGGTCACCGCCATGGATGTCGTCTACGCGCTCAAGCGCCAAG 1040075 Query 16671 GCCG 16674 |||| Sbjct 1040076 GCCG 1040079 >seq11 Length=595839 Score = 167 bits (184), Expect = 4e-37 Identities = 185/244 (76%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || ||||| ||||| ||||| ||||| || | Sbjct 406002 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATTCAAGGCATCACGAAGCCGGCGA 406060 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||| |||||||| |||||||| |||| || | |||| ||||||| Sbjct 406061 TCCGACGCTTGGCTCGCCGTGGTGGTGTCAAGCGCATCTCCGGTCTCATCTACGAAGAGA 406120 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | |||||| ||| ||| |||| |||||| | ||| |||| Sbjct 406121 CCCGAGGCGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTGACCTACACCG 406180 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| | ||||| |||||| |||||||| ||||||| || | || || |||| Sbjct 406181 AGCACGCTCGCAGAAAGACGGTCACCGCCATGGATGTCGTCTACGCGCTCAAGCGCCAAG 406240 Query 16671 GCCG 16674 |||| Sbjct 406241 GCCG 406244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075181713860