Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1 304 3e-77
seq8 87.8 5e-12
>seq1
Length=1096037
Score = 304 bits (336), Expect = 3e-77
Identities = 635/941 (67%), Gaps = 4/941 (0%)
Strand=Plus/Plus
Query 363373 GATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATC 363432
||| |||| || || ||||| | || ||| | ||| |||||| | | || |||
Sbjct 13803 GATTTCGATTACGACTACTTCGGGTTCAAAACGCTTGAGCGTTCCTACTTGTTGCGCATC 13862
Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492
| || | | || || || ||||| ||| || | |||||||| | || || |||||
Sbjct 13863 GACGGCAAGGTCGTCGAGCGTCCGCAACATTTGCTTATGCGTGTCTCCATCGGCATCCAC 13922
Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCG-TGTATTCAC 363551
| || | || |||||||| || || | | || || | || || || ||
Sbjct 13923 AAGACCGACATCGAAAAGGCGATTGATACGTACCACATGCTGAGCGAACGATGGATG-AC 13981
Query 363552 GCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTT 363611
|||||| |||| || ||| ||| ||||| || | ||| ||| | ||||| |||||
Sbjct 13982 GCACGCGTCGCCGACGTTGTTCAACGCTGGTACCCCGCGTCCGCAGCTTTCTTCGTGCTT 14041
Query 363612 TCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGC 363671
| | |||||||| |||||||||||||| || | ||||| || ||| | || ||
Sbjct 14042 CTTGATTTGCATGAAGGAAGATTCCATCGAGGGCATTTACGACACGCTGAAGGAGTGCGC 14101
Query 363672 TCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAA 363731
|||||| || ||| || || || ||| | || |||||| || | || || ||
Sbjct 14102 GTGTATTTCAAAATCTGCCGGAGGTATCGGTTTGTCCATCCACGATATCCGAGCTACGAG 14161
Query 363732 CAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTT 363791
| ||||||||| ||||| ||| ||||| || | |||| ||||| ||||||||
Sbjct 14162 CTCTTACATTCGAGGCACCAACGGAACGTCGAACGGCATCATTCCGATGCTGCGTGTGTT 14221
Query 363792 TGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851
|| | || || | ||||| ||||| ||||| || |||||||| || ||||| || ||
Sbjct 14222 CAACGACACGGCTCGCTACGTGGACCAAGGTGGTGGTAAGCGCAAGGGAGCGTTCGCCAT 14281
Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911
|| |||||||| || || || || ||||| | ||||| | || || ||| ||
Sbjct 14282 CTACCTCGAGCCGTGGCACGCAGACATCTTTGACTGGCTTGACTTGCGTAAGAACCACGG 14341
Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971
|| |||||| ||| || || ||||||||||| | || ||| ||| |||||
Sbjct 14342 TAAGGAGGAAGCGCGCGCGCGCGATCTGTTCTACGGCCTGTGGACGAACGACTTGTTTAT 14401
Query 363972 GAAGCGCGTGGAGGC-AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTC 364030
||||||||| ||||| | ||| ||| | | | ||||| |||| || || ||
Sbjct 14402 GAAGCGCGTCGAGGCGAACGGCGAA-TGGACGTTGATGTGCCCGAACGAGTGCCCTGGAT 14460
Query 364031 TTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA 364090
| || || |||||||| || | | |||| || |||||||| ||| ||||||| |
Sbjct 14461 TGTCTGACTGCTGGGGTGAGGAATTCGAAACTCTGTATGAAAAGTACGAAGCGGAGGGTA 14520
Query 364091 AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150
||| | ||||| || || || | || |||||||||||| | || || || |||
Sbjct 14521 AGGGTAAGAAGACCATCAAGGCTCAACAACTTTGGTTTGCCATCCTCGAGTCCCAAGTTG 14580
Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210
|||| || | || || ||| | | || ||| |||||||||||||||| ||||| ||
Sbjct 14581 AGACCGGTAACCCATACATGCTCTTTAAGGATGCGTGCAACCGCAAGTCTAACCAACAAA 14640
Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCG 364270
|||| || || || || |||| | || || |||||| |||| ||||| || |
Sbjct 14641 ACCTCGGCACGATCAAGTCCTCCAACTTGTGCACAGAGATTGTTGAGTACACGAGCCCGG 14700
Query 364271 ACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311
| || || ||||| || ||| | || || ||||| || |||
Sbjct 14701 ATGAAACCGCCGTGTGCAACTTGGCTTCCATCGCTCTGCCG 14741
Score = 109 bits (120), Expect = 1e-18
Identities = 272/404 (67%), Gaps = 12/404 (3%)
Strand=Plus/Plus
Query 111489 GGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACC 111548
||||||||||| || |||||||| || |||||| | |||||||| || || |||| | |
Sbjct 961187 GGTGATCTCGGCCCCGTTTACGGTTTCCAATGGAGACACTTTGGCGCCGAATACACGAAC 961246
Query 111549 ATGCA---CGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAA 111605
||||| ||||| | | | || |||| ||||||||| | || || | |
Sbjct 961247 ATGCACGCCGACT-ACACG-GGCA-AGGGCGTTGATCAATTGGCCGAGGTTATCAACAAG 961303
Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665
|| ||||| || || || ||||||||| | | | |||||||| || || |
Sbjct 961304 ATCAAGAATAATCCGACCGATCGTCGCATCTTACTTACAGCATGGAATCCGGCAGCGCTA 961363
Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATG 111725
| ||||||| || || || || || | | |||||||| || || | |||| |
Sbjct 961364 AAGGAAATGGCTCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTCGCCAACGG--CG 961421
Query 111726 CTTTCA--TGCCAAATGTATCAGCGATC-TGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782
|| | ||||||||||| ||||| || ||| || || ||||| || || ||||| ||
Sbjct 961422 AATTGAGCTGCCAAATGTACCAGCGCTCGTGC-GACATGGGTCTCGGCGTCCCGTTCAAC 961480
Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGT 111842
|| || ||| | || || || ||| | ||||| || | | ||||| || ||
Sbjct 961481 ATCGCGTCGTACTCCCTGCTCACCTGCATGATCGCGCAAGTGTGCGACCTCAAGCCTGGC 961540
Query 111843 GAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886
|| ||| | |||||| ||||| |||| || ||| |||||||
Sbjct 961541 GATTTCGTCCACGTTTGTGGAGACACGCACGTGTACTCAAACCA 961584
Score = 87.8 bits (96), Expect = 5e-12
Identities = 271/413 (66%), Gaps = 15/413 (4%)
Strand=Plus/Plus
Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809
|| || ||||| || || ||||| | || || || || ||||||||||||||||| |||
Sbjct 15258 GCTCCGATGCCGACCGCGTCTACGTCTCAAATTCTTGGCAACAACGAGTGCTTCGAGCCG 15317
Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869
| || || | || | ||||| || | ||||| || ||| | || || || ||
Sbjct 15318 TACACGTCGAACATCTACGCTCGCCGCGTGTTGTCCGGTGAGTTTACCGTCGTGAACCAG 15377
Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT-GACAGCATGAAGAACTATAT 364928
|| | | ||||| | || | || ||||||| | ||| |||||||| | |
Sbjct 15378 CACTTGTTGTCTGATCTCACTGAGCTTGGCCTGTGGGATCCGGAGC-TGAAGAACGAGCT 15436
Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA-TTTCCAGAAGATCTGAAGCCTA 364987
|||| | || ||||| ||||| || | ||| |||| || | ||||| |
Sbjct 15437 CATCTCGAACAACGGTTCCGTGCAAGACTT----GGACATTCCGGACAACTTGAAGAACA 15492
Query 364988 TTTACAAAACCGTATGGGAAATTTCCATGCGAAC----TCTCATTGATATGGCGGCCGAT 365043
||||||| || || ||||| || || || ||| ||| |||| ||||| || |||
Sbjct 15493 TTTACAAGACGGTGTGGGAGAT---CAAGC-AACGTGTTCTTGTTGACATGGCCGCGGAT 15548
Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103
| || || || || |||| ||||| || ||||| ||||| | || | | |
Sbjct 15549 AGAGGCGCGTTCATTGATCAGTCTCAGTCCTTCAACGTGCACATGAGCGATCCGAACAGC 15608
Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| ||||| || ||| |||| || |||| |||||| || || ||||| ||
Sbjct 15609 GGTAAGCTCACCTCCTTGCACTTTTACGCGTGGAAGAAGGGCCTGAAGACCGG 15661
>seq8
Length=717457
Score = 87.8 bits (96), Expect = 5e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917
|| || ||||| ||||||||||| || || || |||| |||||||| |||||||| ||
Sbjct 89774 AACCCGTTTGACTGGATGGAACTCATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAG 89715
Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950
| || || ||||||||||| || |||||||||
Sbjct 89714 CGCGTCGGCGAATACCAAAAGGCGGGTGTTATG 89682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303353266015640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |