Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 304 3e-77 seq8 87.8 5e-12 >seq1 Length=1096037 Score = 304 bits (336), Expect = 3e-77 Identities = 635/941 (67%), Gaps = 4/941 (0%) Strand=Plus/Plus Query 363373 GATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATC 363432 ||| |||| || || ||||| | || ||| | ||| |||||| | | || ||| Sbjct 13803 GATTTCGATTACGACTACTTCGGGTTCAAAACGCTTGAGCGTTCCTACTTGTTGCGCATC 13862 Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 | || | | || || || ||||| ||| || | |||||||| | || || ||||| Sbjct 13863 GACGGCAAGGTCGTCGAGCGTCCGCAACATTTGCTTATGCGTGTCTCCATCGGCATCCAC 13922 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCG-TGTATTCAC 363551 | || | || |||||||| || || | | || || | || || || || Sbjct 13923 AAGACCGACATCGAAAAGGCGATTGATACGTACCACATGCTGAGCGAACGATGGATG-AC 13981 Query 363552 GCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTT 363611 |||||| |||| || ||| ||| ||||| || | ||| ||| | ||||| ||||| Sbjct 13982 GCACGCGTCGCCGACGTTGTTCAACGCTGGTACCCCGCGTCCGCAGCTTTCTTCGTGCTT 14041 Query 363612 TCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGC 363671 | | |||||||| |||||||||||||| || | ||||| || ||| | || || Sbjct 14042 CTTGATTTGCATGAAGGAAGATTCCATCGAGGGCATTTACGACACGCTGAAGGAGTGCGC 14101 Query 363672 TCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAA 363731 |||||| || ||| || || || ||| | || |||||| || | || || || Sbjct 14102 GTGTATTTCAAAATCTGCCGGAGGTATCGGTTTGTCCATCCACGATATCCGAGCTACGAG 14161 Query 363732 CAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTT 363791 | ||||||||| ||||| ||| ||||| || | |||| ||||| |||||||| Sbjct 14162 CTCTTACATTCGAGGCACCAACGGAACGTCGAACGGCATCATTCCGATGCTGCGTGTGTT 14221 Query 363792 TGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 || | || || | ||||| ||||| ||||| || |||||||| || ||||| || || Sbjct 14222 CAACGACACGGCTCGCTACGTGGACCAAGGTGGTGGTAAGCGCAAGGGAGCGTTCGCCAT 14281 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 || |||||||| || || || || ||||| | ||||| | || || ||| || Sbjct 14282 CTACCTCGAGCCGTGGCACGCAGACATCTTTGACTGGCTTGACTTGCGTAAGAACCACGG 14341 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 || |||||| ||| || || ||||||||||| | || ||| ||| ||||| Sbjct 14342 TAAGGAGGAAGCGCGCGCGCGCGATCTGTTCTACGGCCTGTGGACGAACGACTTGTTTAT 14401 Query 363972 GAAGCGCGTGGAGGC-AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTC 364030 ||||||||| ||||| | ||| ||| | | | ||||| |||| || || || Sbjct 14402 GAAGCGCGTCGAGGCGAACGGCGAA-TGGACGTTGATGTGCCCGAACGAGTGCCCTGGAT 14460 Query 364031 TTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA 364090 | || || |||||||| || | | |||| || |||||||| ||| ||||||| | Sbjct 14461 TGTCTGACTGCTGGGGTGAGGAATTCGAAACTCTGTATGAAAAGTACGAAGCGGAGGGTA 14520 Query 364091 AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 ||| | ||||| || || || | || |||||||||||| | || || || ||| Sbjct 14521 AGGGTAAGAAGACCATCAAGGCTCAACAACTTTGGTTTGCCATCCTCGAGTCCCAAGTTG 14580 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 |||| || | || || ||| | | || ||| |||||||||||||||| ||||| || Sbjct 14581 AGACCGGTAACCCATACATGCTCTTTAAGGATGCGTGCAACCGCAAGTCTAACCAACAAA 14640 Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCG 364270 |||| || || || || |||| | || || |||||| |||| ||||| || | Sbjct 14641 ACCTCGGCACGATCAAGTCCTCCAACTTGTGCACAGAGATTGTTGAGTACACGAGCCCGG 14700 Query 364271 ACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 | || || ||||| || ||| | || || ||||| || ||| Sbjct 14701 ATGAAACCGCCGTGTGCAACTTGGCTTCCATCGCTCTGCCG 14741 Score = 109 bits (120), Expect = 1e-18 Identities = 272/404 (67%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 111489 GGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACC 111548 ||||||||||| || |||||||| || |||||| | |||||||| || || |||| | | Sbjct 961187 GGTGATCTCGGCCCCGTTTACGGTTTCCAATGGAGACACTTTGGCGCCGAATACACGAAC 961246 Query 111549 ATGCA---CGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAA 111605 ||||| ||||| | | | || |||| ||||||||| | || || | | Sbjct 961247 ATGCACGCCGACT-ACACG-GGCA-AGGGCGTTGATCAATTGGCCGAGGTTATCAACAAG 961303 Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665 || ||||| || || || ||||||||| | | | |||||||| || || | Sbjct 961304 ATCAAGAATAATCCGACCGATCGTCGCATCTTACTTACAGCATGGAATCCGGCAGCGCTA 961363 Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATG 111725 | ||||||| || || || || || | | |||||||| || || | |||| | Sbjct 961364 AAGGAAATGGCTCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTCGCCAACGG--CG 961421 Query 111726 CTTTCA--TGCCAAATGTATCAGCGATC-TGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 || | ||||||||||| ||||| || ||| || || ||||| || || ||||| || Sbjct 961422 AATTGAGCTGCCAAATGTACCAGCGCTCGTGC-GACATGGGTCTCGGCGTCCCGTTCAAC 961480 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGT 111842 || || ||| | || || || ||| | ||||| || | | ||||| || || Sbjct 961481 ATCGCGTCGTACTCCCTGCTCACCTGCATGATCGCGCAAGTGTGCGACCTCAAGCCTGGC 961540 Query 111843 GAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 || ||| | |||||| ||||| |||| || ||| ||||||| Sbjct 961541 GATTTCGTCCACGTTTGTGGAGACACGCACGTGTACTCAAACCA 961584 Score = 87.8 bits (96), Expect = 5e-12 Identities = 271/413 (66%), Gaps = 15/413 (4%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || || ||||| | || || || || ||||||||||||||||| ||| Sbjct 15258 GCTCCGATGCCGACCGCGTCTACGTCTCAAATTCTTGGCAACAACGAGTGCTTCGAGCCG 15317 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || || | || | ||||| || | ||||| || ||| | || || || || Sbjct 15318 TACACGTCGAACATCTACGCTCGCCGCGTGTTGTCCGGTGAGTTTACCGTCGTGAACCAG 15377 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT-GACAGCATGAAGAACTATAT 364928 || | | ||||| | || | || ||||||| | ||| |||||||| | | Sbjct 15378 CACTTGTTGTCTGATCTCACTGAGCTTGGCCTGTGGGATCCGGAGC-TGAAGAACGAGCT 15436 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA-TTTCCAGAAGATCTGAAGCCTA 364987 |||| | || ||||| ||||| || | ||| |||| || | ||||| | Sbjct 15437 CATCTCGAACAACGGTTCCGTGCAAGACTT----GGACATTCCGGACAACTTGAAGAACA 15492 Query 364988 TTTACAAAACCGTATGGGAAATTTCCATGCGAAC----TCTCATTGATATGGCGGCCGAT 365043 ||||||| || || ||||| || || || ||| ||| |||| ||||| || ||| Sbjct 15493 TTTACAAGACGGTGTGGGAGAT---CAAGC-AACGTGTTCTTGTTGACATGGCCGCGGAT 15548 Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103 | || || || || |||| ||||| || ||||| ||||| | || | | | Sbjct 15549 AGAGGCGCGTTCATTGATCAGTCTCAGTCCTTCAACGTGCACATGAGCGATCCGAACAGC 15608 Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | ||||| || ||| |||| || |||| |||||| || || ||||| || Sbjct 15609 GGTAAGCTCACCTCCTTGCACTTTTACGCGTGGAAGAAGGGCCTGAAGACCGG 15661 >seq8 Length=717457 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 || || ||||| ||||||||||| || || || |||| |||||||| |||||||| || Sbjct 89774 AACCCGTTTGACTGGATGGAACTCATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAG 89715 Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 | || || ||||||||||| || ||||||||| Sbjct 89714 CGCGTCGGCGAATACCAAAAGGCGGGTGTTATG 89682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353266015640