Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 seq3 84.2 2e-11 >seq12 Length=542657 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| |||| || ||||||||||||| || Sbjct 189346 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189405 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || || || || || Sbjct 189406 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189465 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || || | || || | ||||||| ||| ||| ||||| Sbjct 189466 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189525 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || || ||||| Sbjct 189526 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189557 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| |||| || ||||||||||||| || Sbjct 189574 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189633 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || || || || || Sbjct 189634 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189693 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || || | || || | ||||||| ||| ||| ||||| Sbjct 189694 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189753 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || || ||||| Sbjct 189754 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189785 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || |||| || ||||||||||||| || Sbjct 189118 ATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCG 189177 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || || || || || Sbjct 189178 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189237 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || || | || || | ||||||| ||| ||| ||||| Sbjct 189238 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189297 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || || ||||| Sbjct 189298 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189329 >seq3 Length=997348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 51178 GTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCG 51237 ||||| |||| || |||||||||||||||||||| | | ||||||||||||||| | Sbjct 934980 GTCCACTCCAGGATCTTCTTGGCCCAGTACATGCGGCAGAAGCCGTGCATCTTGCCCCCA 935039 Query 51238 CAACG-AAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTG 51284 | || || ||| || |||| ||||||||| |||||||| ||||| Sbjct 935040 TAGCGCAATTCTCGC-TGCGCCGCGTTCCACAAATCGTCGTGCGTTTG 935086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327894376300