Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq12 113 4e-20
seq3 84.2 2e-11
>seq12
Length=542657
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || ||||| |||| || ||||||||||||| ||
Sbjct 189346 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189405
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| ||||| || || || || ||
Sbjct 189406 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189465
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || || ||||| || || | || || | ||||||| ||| ||| |||||
Sbjct 189466 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189525
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || |||||||| || || |||||
Sbjct 189526 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189557
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || ||||| |||| || ||||||||||||| ||
Sbjct 189574 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189633
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| ||||| || || || || ||
Sbjct 189634 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189693
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || || ||||| || || | || || | ||||||| ||| ||| |||||
Sbjct 189694 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189753
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || |||||||| || || |||||
Sbjct 189754 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189785
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || || || |||| || ||||||||||||| ||
Sbjct 189118 ATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCG 189177
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| ||||| || || || || ||
Sbjct 189178 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189237
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || || ||||| || || | || || | ||||||| ||| ||| |||||
Sbjct 189238 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189297
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || |||||||| || || |||||
Sbjct 189298 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCT 189329
>seq3
Length=997348
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/108 (79%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 51178 GTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCG 51237
||||| |||| || |||||||||||||||||||| | | ||||||||||||||| |
Sbjct 934980 GTCCACTCCAGGATCTTCTTGGCCCAGTACATGCGGCAGAAGCCGTGCATCTTGCCCCCA 935039
Query 51238 CAACG-AAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTG 51284
| || || ||| || |||| ||||||||| |||||||| |||||
Sbjct 935040 TAGCGCAATTCTCGC-TGCGCCGCGTTCCACAAATCGTCGTGCGTTTG 935086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327894376300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |