Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq12 107 2e-18
seq1 96.9 3e-15
seq8 93.3 4e-14
>seq12
Length=542657
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | || ||||| || | || || |||||||| || |
Sbjct 189346 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189405
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || ||||||||||| || || || || |||||
Sbjct 189406 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189465
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || || ||||| || ||| | ||||| ||||| | |||| ||||||
Sbjct 189466 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189525
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || ||||| | || || || | || |||||||| ||
Sbjct 189526 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGG 189572
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | || ||||| || | || || |||||||| || |
Sbjct 189574 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189633
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || ||||||||||| || || || || |||||
Sbjct 189634 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189693
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || || ||||| || ||| | ||||| ||||| | |||| ||||||
Sbjct 189694 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189753
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || ||||| | || || || | || |||||||| ||
Sbjct 189754 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGG 189800
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | || || || || | || || |||||||| || |
Sbjct 189118 ATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCG 189177
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || ||||||||||| || || || || |||||
Sbjct 189178 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189237
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || || ||||| || ||| | ||||| ||||| | |||| ||||||
Sbjct 189238 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189297
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || ||||| | || || || | || |||||||| ||
Sbjct 189298 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGG 189344
>seq1
Length=1096037
Score = 96.9 bits (106), Expect = 3e-15
Identities = 263/398 (66%), Gaps = 11/398 (3%)
Strand=Plus/Minus
Query 129984 CGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTAC 130043
||| |||||||| |||| || | ||| ||||| || ||||||||||| |||
Sbjct 14444 CGGGCACATCAACGTCCATTCGCCGTTCGCCTCGACGCGCTTCATAAACAAGTCGTTCGT 14385
Query 130044 CCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTT---ACGTTT 130100
||||||| |||| |||| ||| ||||| ||||| ||| ||| |||
Sbjct 14384 CCACAGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTCCTTACCGTGGTTCTTACG--- 14328
Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160
|| ||||| | || | ||||| ||||||||||| || | || || || | || ||
Sbjct 14327 CAAGTCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAACGCTCC 14268
Query 130161 CTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217
||| || || || |||||||| |||| ||| | | | |||| | || |||| |||
Sbjct 14267 CTTGCGCTTACCACCACCTTGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCAT 14208
Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTC-AATGAAACTGCCACGAGCCCGAA 130276
| | ||||| | ||| ||||| |||| ||| |||| || || ||| || |
Sbjct 14207 CGGAATGATGCCGTTCGACGTTCCGTTGGTGC-CTCGAATGTAAGAGCTCGTAGCTCGGA 14149
Query 130277 CGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTA 130336
| || | | | ||| || || ||| || ||||||| || ||||||| || |
Sbjct 14148 TATCGTGGATGGACAAACCGATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCA 14089
Query 130337 GCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATG 130374
|||| || |||||||| |||| ||||| || |||
Sbjct 14088 GCGTGTCGTAAATGCCCTCGATGGAATCTTCCTTCATG 14051
>seq8
Length=717457
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| ||||| || |||| | || ||||| || | || ||| | ||| | | ||
Sbjct 310446 ACTGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCG 310505
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || ||||| |||||||| || || || ||||| |||||| | || || || || ||
Sbjct 310506 AAGATCCAAGATAAGGAGGGCATCCCGCCGGATCAGCAACGTTTGATTTTCGCGGGGAAG 310565
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| |||||| | | ||||||||||| ||||| || || || | ||
Sbjct 310566 CAGCTCGAGGACGGCCGCACGTTGGCGGATTACAACATCCAAAAGGAGTCTACGCTCCAC 310625
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| || ||||| ||||| || |||
Sbjct 310626 TTGGTGTTGCGCTTGCGAGGTGGT 310649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727897691300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |