Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12 107 2e-18 seq1 96.9 3e-15 seq8 93.3 4e-14 >seq12 Length=542657 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || | || || |||||||| || | Sbjct 189346 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189405 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||||||||| || || || || ||||| Sbjct 189406 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189465 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || ||| | ||||| ||||| | |||| |||||| Sbjct 189466 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189525 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || || || | || |||||||| || Sbjct 189526 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGG 189572 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || | || || |||||||| || | Sbjct 189574 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189633 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||||||||| || || || || ||||| Sbjct 189634 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189693 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || ||| | ||||| ||||| | |||| |||||| Sbjct 189694 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189753 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || || || | || |||||||| || Sbjct 189754 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGG 189800 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || || |||||||| || | Sbjct 189118 ATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCG 189177 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||||||||| || || || || ||||| Sbjct 189178 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189237 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| || ||| | ||||| ||||| | |||| |||||| Sbjct 189238 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189297 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || || || | || |||||||| || Sbjct 189298 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGG 189344 >seq1 Length=1096037 Score = 96.9 bits (106), Expect = 3e-15 Identities = 263/398 (66%), Gaps = 11/398 (3%) Strand=Plus/Minus Query 129984 CGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTAC 130043 ||| |||||||| |||| || | ||| ||||| || ||||||||||| ||| Sbjct 14444 CGGGCACATCAACGTCCATTCGCCGTTCGCCTCGACGCGCTTCATAAACAAGTCGTTCGT 14385 Query 130044 CCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTT---ACGTTT 130100 ||||||| |||| |||| ||| ||||| ||||| ||| ||| ||| Sbjct 14384 CCACAGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTCCTTACCGTGGTTCTTACG--- 14328 Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 || ||||| | || | ||||| ||||||||||| || | || || || | || || Sbjct 14327 CAAGTCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAACGCTCC 14268 Query 130161 CTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 ||| || || || |||||||| |||| ||| | | | |||| | || |||| ||| Sbjct 14267 CTTGCGCTTACCACCACCTTGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCAT 14208 Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTC-AATGAAACTGCCACGAGCCCGAA 130276 | | ||||| | ||| ||||| |||| ||| |||| || || ||| || | Sbjct 14207 CGGAATGATGCCGTTCGACGTTCCGTTGGTGC-CTCGAATGTAAGAGCTCGTAGCTCGGA 14149 Query 130277 CGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTA 130336 | || | | | ||| || || ||| || ||||||| || ||||||| || | Sbjct 14148 TATCGTGGATGGACAAACCGATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCA 14089 Query 130337 GCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATG 130374 |||| || |||||||| |||| ||||| || ||| Sbjct 14088 GCGTGTCGTAAATGCCCTCGATGGAATCTTCCTTCATG 14051 >seq8 Length=717457 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || |||| | || ||||| || | || ||| | ||| | | || Sbjct 310446 ACTGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCG 310505 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||| |||||||| || || || ||||| |||||| | || || || || || Sbjct 310506 AAGATCCAAGATAAGGAGGGCATCCCGCCGGATCAGCAACGTTTGATTTTCGCGGGGAAG 310565 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| | | ||||||||||| ||||| || || || | || Sbjct 310566 CAGCTCGAGGACGGCCGCACGTTGGCGGATTACAACATCCAAAAGGAGTCTACGCTCCAC 310625 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| ||||| || ||| Sbjct 310626 TTGGTGTTGCGCTTGCGAGGTGGT 310649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727897691300