Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8 174 3e-38 seq1 136 7e-27 seq12 134 3e-26 >seq8 Length=717457 Score = 174 bits (192), Expect = 3e-38 Identities = 369/538 (69%), Gaps = 12/538 (2%) Strand=Plus/Minus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||| || || ||||| || || ||| | ||||||||||| ||||||||| | || | Sbjct 90226 TGTTCCGCGCTATCGAGACCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGT 90167 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 |||| || ||| | || |||| | |||| | ||| | || || | | | |||| Sbjct 90166 GGATTGAC--TCCAG-CGACTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGG 90110 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATG 42788 | ||||||||||| || | ||| |||||||| |||||| ||| || ||| | ||| Sbjct 90109 GTATCTTCTTCTCTGGTTCGTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCT-TATG 90051 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 || || | |||||||| ||||| |||||| | || ||||| |||| | |||||| Sbjct 90050 CCGGGTTTGACCTTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTT 89991 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC-CTCGAAGGAGCGGGTCCGGGC 42907 || |||||| | | | | | |||| ||||||| ||||| || || || Sbjct 89990 GCTTGCCTCTTATAC-CAA--ATGCTCAACAACAAGCCGGACGAAGAAG-TCGTGCGTAA 89935 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-T 42966 || |||| || || || |||||||||||||||||| | | || || ||||| Sbjct 89934 GATTGTCACCGAAGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCT-TCCGTGCG 89876 Query 42967 CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATC 43026 | || || || |||||| || | ||| || | ||||| | |||||||||||||| Sbjct 89875 CGCTCGTTGGTATGAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGACCACT 89816 Query 43027 TCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGG 43086 | | | | ||| | | ||||||||| || ||| || |||| |||| Sbjct 89815 TGTTCACCTCCCTTGGTATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACTGGATGG 89756 Query 43087 AGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 | ||||||| | | |||||||||||||| |||||||||||||||| ||| ||||| Sbjct 89755 AACTCATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAATACCA 89698 >seq1 Length=1096037 Score = 136 bits (150), Expect = 7e-27 Identities = 469/731 (64%), Gaps = 8/731 (1%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| ||||| || |||| | | ||||||| |||||||| ||||| | | Sbjct 14725 GCCAAGTTGCACACGGCGGTTTCATCCGGGCTCGTGTACTCAACAATCTCTGTGCACAAG 14666 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || | ||||||| ||||| |||| || || || |||||| |||||| || ||||| Sbjct 14665 TTGGAGGACTTGATCGTGCCGAGGTTTTGTTGGTTAGACTTGCGGTTGCACGCATCCTTA 14606 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 |||||||| | || |||||||| | |||| |||||| | ||| || | Sbjct 14605 AAGAGCATGTATGGGTTACCGGTCTCAACTTGGGACTCGAGGATGGCAAACCAAAGTTGT 14546 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 |||||||| ||| | | |||| ||||| || ||||| ||||| | ||| Sbjct 14545 TGAGCCTTGATGGTCTTCTTACCCTTACCCTCCGCTTCGTACTTTTCATACAGAGTTTCG 14486 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 || || |||||| || | || |||||| ||||||||| | |||| Sbjct 14485 AATTCCTCACCCCAGCAGTCAGACAATCCAGGGCACTCGTTCGGGCACATCAACGTCCAT 14426 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 |||||| ||| ||| | || ||| || | |||| |||| ||| | | ||| || Sbjct 14425 TCGCCGTTCGCCTCGACGCGCTTCATAAACAAGTCGTTCGTCCACAGGCCGTAGAACAGA 14366 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | | | | || ||| || |||||| | || || | ||||||||| | Sbjct 14365 TCGCGCGCGCGCGCTTCCTCCTTACCGTGGTTCTTACGCAAGTCAAGCCAGTCAAAGATG 14306 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 || ||||||| ||||| | ||||| |||| || || ||||| || || ||| Sbjct 14305 TCTGCGTGCCACGGCTCGAGGTAGATGGCGAACGCTCCCTTGCGCTTACCACCACCTTGG 14246 Query 245168 TCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 ||||| | ||||| ||||||| | ||||| | || | |||||||| || Sbjct 14245 TCCACG----TAGCGAGCCGTGTCGTTGAACACACGCAGCATCGGAATGATGCCGTTCGA 14190 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCC 245283 ||||||||||| ||||| | || | | | | || | | |||||||| || Sbjct 14189 CGTTCCGTTGGTGCCTCGAATGTAAGAGCTCGTAGCTCGGATATCGTGGATGGACAAACC 14130 Query 245284 TAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTC 245343 | || ||||| || || || ||||| ||| | ||||| |||||||| Sbjct 14129 GATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCAGCGTGTCGTAAATGCCCTC 14070 Query 245344 CATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCA 245403 ||| || ||||||| | || ||||| || || ||||| || ||| | | Sbjct 14069 GATGGAATCTTCCTTCATGCAAATCAAGAAGCACGAAGAAAGCTGCGGACGCGGGGTACC 14010 Query 245404 CGAGTTGAACA 245414 | |||||||| Sbjct 14009 AGCGTTGAACA 13999 >seq12 Length=542657 Score = 134 bits (148), Expect = 3e-26 Identities = 301/444 (68%), Gaps = 15/444 (3%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| || |||||| | |||||||| || ||||| ||| | | | ||||||| Sbjct 198461 TGGCGTTTTTCGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCGCGATTCATGA 198402 Query 42484 AAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || |||||| ||| |||||||| | |||||||| || || | || || ||||| Sbjct 198401 GCGACGTGCAG--CTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCGATCGAGAA 198344 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | ||| ||| ||||| | || | ||||||||||| |||||| | || | Sbjct 198343 CATTCACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGATCC-GAAGAA-G 198286 Query 42602 TAA--CGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACT 42657 || || |||| ||||| | || |||| ||| | || ||| || |||| Sbjct 198285 AAATCCGAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGC--GATGAAAGCAGACT 198228 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 ||||||| | ||||||| || |||||| | |||| ||| |||||||| | || Sbjct 198227 GGGCGCTTCATTGGATCGGTAG---CGACGCGAGCTTCGCCGAAAGGCTGGTGGGATTCG 198171 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | |||||| || ||||||||| || | ||| | ||||||||||||| || || Sbjct 198170 CGTGCGTCGAAGGAATCTTCTTCAGTGGGTCATTCTGCGCCATCTTCTGGCTGAAAAAGC 198111 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | | ||||| ||| | |||||||| ||||| ||||||||| | ||||| || ||| Sbjct 198110 GAGGATTGATGCGCGGTTTAACCTTCTCCAACGAGCTCATCAGCCGAGACGAAGGCTTGC 198051 Query 42838 ATAGGGACTTTGCCTGCCTCCTGT 42861 | | ||||| || ||| | |||| Sbjct 198050 ACTGCGACTTCGCTTGCTTGCTGT 198027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338963915200