Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq13 210 5e-49
seq12 118 3e-21
seq7 116 9e-21
seq8 100 7e-16
>seq13
Length=549623
Score = 210 bits (232), Expect = 5e-49
Identities = 743/1129 (66%), Gaps = 40/1129 (4%)
Strand=Plus/Minus
Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381
|| || |||| || |||||||||||||| || ||||| | || ||| || || || |
Sbjct 19907 ATGTAACGTGGGCTTGCGTGATCCTTACCGCCTTGCAAACGCGTACCAAATTGACCGCTC 19848
Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441
|||| | | |||||||||| || ||||| |||| || || | ||| |||||||||
Sbjct 19847 GGCACGAGCAAGTTGATGTTGTTCGAACCGACGAAATCTTGCGCCAAGTTGACGATGGTC 19788
Query 325442 CCTTGC-AGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAA 325500
| || || || |||||||| || ||||| ||| ||||| | || || ||||| ||
Sbjct 19787 A-TCGCGAGTGAAGCTTCGCCGTGATGATACGCGGAGTGCTCCGAGACATAGCCGCTCAA 19729
Query 325501 CTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCG 325560
||| || || || | || | | | | ||||||||||| ||| | | || || ||
Sbjct 19728 CTGCGCGACTTTGATATCCGACTTGAGCTTGCGCTTGAAGCATGAGAAGAGAACCTTGCG 19669
Query 325561 TTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGA 325620
||| || || ||||| || || || | |||||| ||| || || | ||
Sbjct 19668 TTGTGAGGGCTTGAAGCCGTCCACCATGCTCGGAATCGAGCGTAACAAGTCAGCTCTAGA 19609
Query 325621 GAACAAAATAAGTTCCTTGTCGATGAAGTCG--GGAACGGGAA---CCTCGGGCTTCTTG 325675
||||||||| |||||||||| ||| || ||| | | | ||| |||| || ||
Sbjct 19608 GAACAAAATGAGTTCCTTGTTGATAAACTCGTCGTATC--GAATCGCCTC--GCCGCTCA 19553
Query 325676 TGGTCAAG-TTGATTTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCTCG 325734
| |||| || | ||||| ||||| || ||| ||| | |||||||||||| | ||
Sbjct 19552 TATCCAAGAATG--TGCCTGGCTCGTACGCATTCAGCCAAGCTTTGCGATCCTCGACACG 19495
Query 325735 TGACTTGTTGAAAGAACGGTCAATGAGCTCTCCG---GAATCGGAAGTCCACATAAACGT 325791
|||| |||| || ||| || | || ||| |||| ||| || || |
Sbjct 19494 CTTCTTGCTGAACGACATGTCGATCAAGTCACCGTCACCATCGCTTTCCCAGATGAAATT 19435
Query 325792 CTTCATGAGAGACTTCAGATTGCTGAAGTATTTTTTGGCATC-TGCACTGGAACTCGTAC 325850
||| | | | ||| |||||| | ||||| || | | || | |||||||
Sbjct 19434 CTTGCGGTGGTGATCAAGAGACGCGAAGTACTCCTTGGCTTCATTCGCT-GTGCTCGTAC 19376
Query 325851 CAAGCCCCTTAAAATACTTGGTCGTCCATTTCTTCATATCTTGTGTCTTC----ACGAAG 325906
|||| ||||| | |||||| | ||||| | |||| || | | |||
Sbjct 19375 CAAGACCCTTGTAGTACTTGATGCTCCATCCAGCCGAGCCTTGGTTCGCCTCCTTCCAAG 19316
Query 325907 TCTTCGAAGTCAGGAAGACTG-AAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACTAC 325965
|| ||| | || || | || | || || |||| | || ||||| | || |
Sbjct 19315 TC-TCGTACTCGGGCAACGTGTAGAACACCTTCGACTGC-TTCCCCTTGGTCGCCTTGAT 19258
Query 325966 GATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAA-ACAGC 326024
||| ||||||||||||| ||| || || ||||| | || ||| ||||| |||
Sbjct 19257 GATCGGCGTGATGAACTCGAGCAAAAAACCAGGAATCTTAAGCAGAGATGGGAAGTGAGC 19198
Query 326025 TATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCA 326084
|| || ||||| |||| ||||| |||||||| || ||| ||| ||| ||||
Sbjct 19197 -GTGCAAGAAGTTGATGAGAAGACCCTTAATGTGAGAACCATCATGATCTTGGTCTGTCA 19139
Query 326085 TGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAA 326144
||||||| | | ||||||||| | ||| | | | |||| | || ||| || |
Sbjct 19138 TGATCATGAGCTTACCGTAACGCAACGATTTGGCGCTATCGTACTCCTTGCCGTGCTGCA 19079
Query 326145 GGCCGAGAATTTGTTTGAGCGCTG-TGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GA 326202
| ||||||||||| |||| | || ||||||| |||| || |||| | | || | ||
Sbjct 19078 GACCGAGAATTTGCTTGA-TGTTGTTGATTTCGGCGTTGTTTTTGAT-TTGGTCATGCGA 19021
Query 326203 TGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACC 326262
|||||||| ||||||| ||||| |||||||| ||||| || ||||| | || | ||
Sbjct 19020 AGCATCGCGCACGTTCAGAAGTTTACCACGAAGCGGGAAGACACCATACTTGTCTCTGCC 18961
Query 326263 GACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAG 326322
|| ||||| || || | || || | | || |||||||| || || ||||| |
Sbjct 18960 AACGACGGAGAGACCGCTCACAGCGAGCGCCTTGGCAGAATCCCCTTCGGTGAGAATCAA 18901
Query 326323 AGTGCACATTTTGCTGTTATTCGTTCCAGC-CCAT--GTAGCATCGTTGAGTTTGGGAAT 326379
||| ||| | | |||| |||| | ||| | || || | ||| || || ||
Sbjct 18900 AGT--ACAAGACTCAGAGTTTCG-TCCACCGGCATCGTTGGCGTCATCGAGCTTCGGGAT 18844
Query 326380 TCCAGTCACTCG-GATCTTCTTGGTACCGTCGGTCTTCTTCAGCTCTTT 326427
||| |||| || || | ||||| |||||| ||||||||||| || ||
Sbjct 18843 TCCCGTCAGACGTGAGC-GCTTGGCACCGTCAGTCTTCTTCAGTTCCTT 18796
>seq12
Length=542657
Score = 118 bits (130), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| | | || || | || | |||| || || ||||| || ||||
Sbjct 189348 CATG-CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGT 189290
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|||| | ||||| ||||| || | || || || |||||||||| ||| || |||
Sbjct 189289 CGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCG 189230
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| ||||| || || ||||| ||||| || ||||| || || | || || |
Sbjct 189229 GCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACT 189170
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||||||||||| || ||||| || || || ||||| ||||| || |||||
Sbjct 189169 CCACTTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118
Score = 118 bits (130), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| | | || || | || | |||| || || ||||| || ||||
Sbjct 189576 CATG-CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGT 189518
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|||| | ||||| ||||| || | || || || |||||||||| ||| || |||
Sbjct 189517 CGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCG 189458
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| ||||| || || ||||| ||||| || ||||| || || | || || |
Sbjct 189457 GCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACT 189398
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| ||||||||||| || ||||| || || || ||||| ||||| || |||||
Sbjct 189397 CCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| | | || || | || | |||| || || ||||| || ||||||||
Sbjct 189800 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189741
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| ||||| || | || || || |||||||||| ||| || ||| |||
Sbjct 189740 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189681
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || || ||||| ||||| || ||||| || || | || || || |||
Sbjct 189680 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189621
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| || ||||| || || || ||||| ||||| || |||||
Sbjct 189620 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574
>seq7
Length=770246
Score = 116 bits (128), Expect = 9e-21
Identities = 127/169 (75%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||||||||||||||| ||||| || | ||| || || ||||||
Sbjct 134611 TCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAG 134552
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||||||| || ||| ||||| || || ||||| ||||| ||||| ||||||||
Sbjct 134551 ATCAGACGTTGCTGATCCGGCGGGATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTG 134492
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451
|| || | || || || || || | ||||| ||||| || ||||
Sbjct 134491 TCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTACCCGTCA 134443
>seq8
Length=717457
Score = 100 bits (110), Expect = 7e-16
Identities = 175/251 (70%), Gaps = 3/251 (1%)
Strand=Plus/Minus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
||||| ||| | ||| || |||||| | || ||| || | || || | | | |||
Sbjct 89924 GAAGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCTTCCGTGCGCGCTCGTTGGT 89865
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217
||||| |||| | | |||| | || || |||| ||| || || | | ||||| |
Sbjct 89864 ATGAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGACCACTTGTTCACCTCC 89805
Query 269218 CTCGGTTATGAGAAAGT-GTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTC 269276
|| ||| ||| ||| |||||| || ||| || || | || |||||||| || ||
Sbjct 89804 CTTGGT-ATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACTGGATGGAACTCATCTC 89746
Query 269277 GCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGT 269336
|||| |||| ||||| ||||||||||| ||||| ||| |||| || ||| | |||||
Sbjct 89745 GCTCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAATACCAAAAGGCGGGTGT 89686
Query 269337 AATGAA-TCCA 269346
||||| ||||
Sbjct 89685 TATGAACTCCA 89675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654097713560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |