Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 210 5e-49 seq12 118 3e-21 seq7 116 9e-21 seq8 100 7e-16 >seq13 Length=549623 Score = 210 bits (232), Expect = 5e-49 Identities = 743/1129 (66%), Gaps = 40/1129 (4%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 || || |||| || |||||||||||||| || ||||| | || ||| || || || | Sbjct 19907 ATGTAACGTGGGCTTGCGTGATCCTTACCGCCTTGCAAACGCGTACCAAATTGACCGCTC 19848 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441 |||| | | |||||||||| || ||||| |||| || || | ||| ||||||||| Sbjct 19847 GGCACGAGCAAGTTGATGTTGTTCGAACCGACGAAATCTTGCGCCAAGTTGACGATGGTC 19788 Query 325442 CCTTGC-AGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAA 325500 | || || || |||||||| || ||||| ||| ||||| | || || ||||| || Sbjct 19787 A-TCGCGAGTGAAGCTTCGCCGTGATGATACGCGGAGTGCTCCGAGACATAGCCGCTCAA 19729 Query 325501 CTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCG 325560 ||| || || || | || | | | | ||||||||||| ||| | | || || || Sbjct 19728 CTGCGCGACTTTGATATCCGACTTGAGCTTGCGCTTGAAGCATGAGAAGAGAACCTTGCG 19669 Query 325561 TTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGA 325620 ||| || || ||||| || || || | |||||| ||| || || | || Sbjct 19668 TTGTGAGGGCTTGAAGCCGTCCACCATGCTCGGAATCGAGCGTAACAAGTCAGCTCTAGA 19609 Query 325621 GAACAAAATAAGTTCCTTGTCGATGAAGTCG--GGAACGGGAA---CCTCGGGCTTCTTG 325675 ||||||||| |||||||||| ||| || ||| | | | ||| |||| || || Sbjct 19608 GAACAAAATGAGTTCCTTGTTGATAAACTCGTCGTATC--GAATCGCCTC--GCCGCTCA 19553 Query 325676 TGGTCAAG-TTGATTTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCTCG 325734 | |||| || | ||||| ||||| || ||| ||| | |||||||||||| | || Sbjct 19552 TATCCAAGAATG--TGCCTGGCTCGTACGCATTCAGCCAAGCTTTGCGATCCTCGACACG 19495 Query 325735 TGACTTGTTGAAAGAACGGTCAATGAGCTCTCCG---GAATCGGAAGTCCACATAAACGT 325791 |||| |||| || ||| || | || ||| |||| ||| || || | Sbjct 19494 CTTCTTGCTGAACGACATGTCGATCAAGTCACCGTCACCATCGCTTTCCCAGATGAAATT 19435 Query 325792 CTTCATGAGAGACTTCAGATTGCTGAAGTATTTTTTGGCATC-TGCACTGGAACTCGTAC 325850 ||| | | | ||| |||||| | ||||| || | | || | ||||||| Sbjct 19434 CTTGCGGTGGTGATCAAGAGACGCGAAGTACTCCTTGGCTTCATTCGCT-GTGCTCGTAC 19376 Query 325851 CAAGCCCCTTAAAATACTTGGTCGTCCATTTCTTCATATCTTGTGTCTTC----ACGAAG 325906 |||| ||||| | |||||| | ||||| | |||| || | | ||| Sbjct 19375 CAAGACCCTTGTAGTACTTGATGCTCCATCCAGCCGAGCCTTGGTTCGCCTCCTTCCAAG 19316 Query 325907 TCTTCGAAGTCAGGAAGACTG-AAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACTAC 325965 || ||| | || || | || | || || |||| | || ||||| | || | Sbjct 19315 TC-TCGTACTCGGGCAACGTGTAGAACACCTTCGACTGC-TTCCCCTTGGTCGCCTTGAT 19258 Query 325966 GATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAA-ACAGC 326024 ||| ||||||||||||| ||| || || ||||| | || ||| ||||| ||| Sbjct 19257 GATCGGCGTGATGAACTCGAGCAAAAAACCAGGAATCTTAAGCAGAGATGGGAAGTGAGC 19198 Query 326025 TATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCA 326084 || || ||||| |||| ||||| |||||||| || ||| ||| ||| |||| Sbjct 19197 -GTGCAAGAAGTTGATGAGAAGACCCTTAATGTGAGAACCATCATGATCTTGGTCTGTCA 19139 Query 326085 TGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAA 326144 ||||||| | | ||||||||| | ||| | | | |||| | || ||| || | Sbjct 19138 TGATCATGAGCTTACCGTAACGCAACGATTTGGCGCTATCGTACTCCTTGCCGTGCTGCA 19079 Query 326145 GGCCGAGAATTTGTTTGAGCGCTG-TGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GA 326202 | ||||||||||| |||| | || ||||||| |||| || |||| | | || | || Sbjct 19078 GACCGAGAATTTGCTTGA-TGTTGTTGATTTCGGCGTTGTTTTTGAT-TTGGTCATGCGA 19021 Query 326203 TGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACC 326262 |||||||| ||||||| ||||| |||||||| ||||| || ||||| | || | || Sbjct 19020 AGCATCGCGCACGTTCAGAAGTTTACCACGAAGCGGGAAGACACCATACTTGTCTCTGCC 18961 Query 326263 GACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAG 326322 || ||||| || || | || || | | || |||||||| || || ||||| | Sbjct 18960 AACGACGGAGAGACCGCTCACAGCGAGCGCCTTGGCAGAATCCCCTTCGGTGAGAATCAA 18901 Query 326323 AGTGCACATTTTGCTGTTATTCGTTCCAGC-CCAT--GTAGCATCGTTGAGTTTGGGAAT 326379 ||| ||| | | |||| |||| | ||| | || || | ||| || || || Sbjct 18900 AGT--ACAAGACTCAGAGTTTCG-TCCACCGGCATCGTTGGCGTCATCGAGCTTCGGGAT 18844 Query 326380 TCCAGTCACTCG-GATCTTCTTGGTACCGTCGGTCTTCTTCAGCTCTTT 326427 ||| |||| || || | ||||| |||||| ||||||||||| || || Sbjct 18843 TCCCGTCAGACGTGAGC-GCTTGGCACCGTCAGTCTTCTTCAGTTCCTT 18796 >seq12 Length=542657 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| | | || || | || | |||| || || ||||| || |||| Sbjct 189348 CATG-CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGT 189290 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| | ||||| ||||| || | || || || |||||||||| ||| || ||| Sbjct 189289 CGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCG 189230 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || || ||||| ||||| || ||||| || || | || || | Sbjct 189229 GCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACT 189170 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||||||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 189169 CCACTTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| | | || || | || | |||| || || ||||| || |||| Sbjct 189576 CATG-CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGT 189518 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| | ||||| ||||| || | || || || |||||||||| ||| || ||| Sbjct 189517 CGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCG 189458 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || || ||||| ||||| || ||||| || || | || || | Sbjct 189457 GCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACT 189398 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||||||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 189397 CCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | || || | || | |||| || || ||||| || |||||||| Sbjct 189800 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189741 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || | || || || |||||||||| ||| || ||| ||| Sbjct 189740 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189681 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| ||||| || ||||| || || | || || || ||| Sbjct 189680 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189621 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 189620 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 >seq7 Length=770246 Score = 116 bits (128), Expect = 9e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||||||||||||| ||||| || | ||| || || |||||| Sbjct 134611 TCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAG 134552 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| || ||| ||||| || || ||||| ||||| ||||| |||||||| Sbjct 134551 ATCAGACGTTGCTGATCCGGCGGGATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTG 134492 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || || | || || || || || | ||||| ||||| || |||| Sbjct 134491 TCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTACCCGTCA 134443 >seq8 Length=717457 Score = 100 bits (110), Expect = 7e-16 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 ||||| ||| | ||| || |||||| | || ||| || | || || | | | ||| Sbjct 89924 GAAGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCTTCCGTGCGCGCTCGTTGGT 89865 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217 ||||| |||| | | |||| | || || |||| ||| || || | | ||||| | Sbjct 89864 ATGAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGACCACTTGTTCACCTCC 89805 Query 269218 CTCGGTTATGAGAAAGT-GTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTC 269276 || ||| ||| ||| |||||| || ||| || || | || |||||||| || || Sbjct 89804 CTTGGT-ATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACTGGATGGAACTCATCTC 89746 Query 269277 GCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGT 269336 |||| |||| ||||| ||||||||||| ||||| ||| |||| || ||| | ||||| Sbjct 89745 GCTCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAATACCAAAAGGCGGGTGT 89686 Query 269337 AATGAA-TCCA 269346 ||||| |||| Sbjct 89685 TATGAACTCCA 89675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654097713560