Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq13 233 4e-56 seq8 178 3e-39 seq15 96.9 8e-15 seq6 86.0 1e-11 >seq13 Length=549623 Score = 233 bits (258), Expect = 4e-56 Identities = 925/1416 (65%), Gaps = 52/1416 (4%) Strand=Plus/Minus Query 297162 CGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGAT-CTTCTCCAGCA 297220 |||| | || ||||| || ||||||||| | ||| | |||| | | | || || || Sbjct 20188 CGATGCTGCCGTTGAAGTTTCTATACCACGGGTGCATCT-GACGCGCTTCCTCGCCCTCA 20130 Query 297221 ATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGAC 297280 | || | || | |||| | |||||| || ||| | |||| || | |||||| Sbjct 20129 AGCACGAGTTTGATGTTGGAGATGATGTCACGCGGGTTGAAGTTAGGAATGCTCGTCGAC 20070 Query 297281 CAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAA 297340 || || |||||||| || | |||||||| || | | ||||| || || ||| Sbjct 20069 CATCCCGTACCGATGCCTTCGGCGCCATTCACAAGCACGAGCGGAAGCACCGGATAATAG 20010 Query 297341 TACTCTGGTTCGATC--TTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCG 297398 | || || ||||| ||||| | || |||| ||||| ||||| ||| |||||| Sbjct 20009 AAGTCCGGCTCGATACGTTGTC--CATCTTCATCAAGATAGTTCAGCAGAGCATCGTCGC 19952 Query 297399 TATCGACGAAAACCTGTCG--AG-TCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCAC 297455 || ||||| | || || ||| | | ||| ||||| || || |||| | Sbjct 19951 ACTCCGGGAAAATCGCACGGCAGATCTCATG---CAGGCGAGTGAAGATGTAACGTGGGC 19895 Query 297456 TCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGT 297515 | |||||||||||||| || ||||| | || ||| || || || ||||| | | ||| Sbjct 19894 TTGCGTGATCCTTACCGCCTTGCAAACGCGTACCAAATTGACCGCTCGGCACGAGCAAGT 19835 Query 297516 TGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGC-AGAGAT 297574 ||||||| || ||||| |||| || || | ||| ||||||||| | || || || Sbjct 19834 TGATGTTGTTCGAACCGACGAAATCTTGCGCCAAGTTGACGATGGTCA-TCGCGAGTGAA 19776 Query 297575 GCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 297634 |||||||| || ||||| ||| ||||| | || || ||||| ||||| || || || Sbjct 19775 GCTTCGCCGTGATGATACGCGGAGTGCTCCGAGACATAGCCGCTCAACTGCGCGACTTTG 19716 Query 297635 ACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTG 297694 | || | | | | ||||||||||| ||| | | || || ||||| || || ||| Sbjct 19715 ATATCCGACTTGAGCTTGCGCTTGAAGCATGAGAAGAGAACCTTGCGTTGTGAGGGCTTG 19656 Query 297695 AAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGT 297754 || || || || | |||||| ||| || || | ||||||||||| ||| Sbjct 19655 AAGCCGTCCACCATGCTCGGAATCGAGCGTAACAAGTCAGCTCTAGAGAACAAAATGAGT 19596 Query 297755 TCCTTGTCGATGAAGTCG--GGAACGGGAA---CCTCGGGCTTCTTGTGGTCAAG-TTGA 297808 ||||||| ||| || ||| | | | ||| |||| || || | |||| || Sbjct 19595 TCCTTGTTGATAAACTCGTCGTATC--GAATCGCCTC--GCCGCTCATATCCAAGAATG- 19541 Query 297809 TTTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCTCGTGACTTGTTGAAA 297868 | ||||| ||||| || ||| ||| | |||||||||||| | || |||| |||| Sbjct 19540 -TGCCTGGCTCGTACGCATTCAGCCAAGCTTTGCGATCCTCGACACGCTTCTTGCTGAAC 19482 Query 297869 GAACGGTCAATGAGCTCTCCG---GAATCGGAAGTCCACATAAACGTCTTCATGAGAGAC 297925 || ||| || | || ||| |||| ||| || || |||| | | Sbjct 19481 GACATGTCGATCAAGTCACCGTCACCATCGCTTTCCCAGATGAAATTCTTGCGGTGGTGA 19422 Query 297926 TTCAGATTGCTGAAGTATTTTTTGGCATC-TGCACTGGAACTCGTACCAAGCCCCTTAAA 297984 | ||| |||||| | ||||| || | | || | ||||||||||| ||||| | Sbjct 19421 TCAAGAGACGCGAAGTACTCCTTGGCTTCATTCGCT-GTGCTCGTACCAAGACCCTTGTA 19363 Query 297985 ATACTTGGTCGTCCATTTCTTCATATCTTGTGTCTTC----ACGAAGTCTTCGAAGTCAG 298040 |||||| | ||||| | |||| || | | ||||| ||| | || | Sbjct 19362 GTACTTGATGCTCCATCCAGCCGAGCCTTGGTTCGCCTCCTTCCAAGTC-TCGTACTCGG 19304 Query 298041 GAAGACTG-AAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACTACGATAGGCGTGATG 298099 | | || | || || |||| | || ||||| | || | ||| ||||||||| Sbjct 19303 GCAACGTGTAGAACACCTTCGACTGC-TTCCCCTTGGTCGCCTTGATGATCGGCGTGATG 19245 Query 298100 AACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAA-ACAGCTATGGAAAAAGTT 298158 |||| ||| || || ||||| | || ||| ||||| ||| || || ||||| Sbjct 19244 AACTCGAGCAAAAAACCAGGAATCTTAAGCAGAGATGGGAAGTGAGC-GTGCAAGAAGTT 19186 Query 298159 CATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATG 298218 |||| ||||| |||||||| || ||| ||| ||| ||||||||||| | | Sbjct 19185 GATGAGAAGACCCTTAATGTGAGAACCATCATGATCTTGGTCTGTCATGATCATGAGCTT 19126 Query 298219 ACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGAATTTG 298278 ||||||||| | ||| | | | |||| | || ||| || || ||||||||||| Sbjct 19125 ACCGTAACGCAACGATTTGGCGCTATCGTACTCCTTGCCGTGCTGCAGACCGAGAATTTG 19066 Query 298279 TTTGAGCGCTG-TGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GATGCATCGCGGACA 298336 |||| | || ||||||| |||| || |||| | | || | || |||||||| || Sbjct 19065 CTTGA-TGTTGTTGATTTCGGCGTTGTTTTTGAT-TTGGTCATGCGAAGCATCGCGCACG 19008 Query 298337 TTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGC 298396 |||| ||||| |||||||| ||||| || ||||| | || | || || ||||| || Sbjct 19007 TTCAGAAGTTTACCACGAAGCGGGAAGACACCATACTTGTCTCTGCCAACGACGGAGAGA 18948 Query 298397 CCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATTTTG 298456 || | || || | | || |||||||| || || ||||| | ||| ||| Sbjct 18947 CCGCTCACAGCGAGCGCCTTGGCAGAATCCCCTTCGGTGAGAATCAAAGT--ACAAGACT 18890 Query 298457 CTGTTATTCGTTCCAGC-CCAT--GTAGCATCGTTGAGTTTGGGAATTCCAGTCACTCG- 298512 | | |||| |||| | ||| | || || | ||| || || ||||| |||| || Sbjct 18889 CAGAGTTTCG-TCCACCGGCATCGTTGGCGTCATCGAGCTTCGGGATTCCCGTCAGACGT 18831 Query 298513 GATCTTCTTGGTACCGTCGGTCTTCTTCAGCTCTTT 298548 || | ||||| |||||| ||||||||||| || || Sbjct 18830 GAGC-GCTTGGCACCGTCAGTCTTCTTCAGTTCCTT 18796 >seq8 Length=717457 Score = 178 bits (196), Expect = 3e-39 Identities = 368/544 (68%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 243216 CGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGA 243275 ||| ||||| | ||| || ||| | || ||||| | ||||| ||||||| | || Sbjct 90219 CGCTATCGAGACCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGTGGATTGA 90160 Query 243276 ACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTT 243335 || | | || ||||| |||||||| | || | | |||| |||| ||||| | || Sbjct 90159 CTCCAGCGACTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTATCTTCTT 90100 Query 243336 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGG 243395 || || |||||| |||||| ||||| ||| ||| | ||||| || | Sbjct 90099 CTCTGGTTCGTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCGGGTTTGAC 90040 Query 243396 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTAT 243455 | || |||||| ||||| |||||| |||||| | |||| | || | | || | Sbjct 90039 CTTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTTGCTTGCCTCTT 89980 Query 243456 GTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAAC---AAATCATCACAGA 243512 || || |||| | ||||||| | |||| ||| | | || |||| || Sbjct 89979 ATACCAAATGCTCAACAACAAGC---CGGACGAAGAAGTCGTGCGTAAGATTGTCACCGA 89923 Query 243513 AGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCAT 243572 ||| ||||| | ||| ||||| ||| | |||||| || |||| ||| ||| |||| || Sbjct 89922 AGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCTTCCGTGCGCGCTCGTTGGTAT 89863 Query 243573 GAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCT 243632 |||| | | | ||| | | ||||| |||| ||| ||||||| | | |||| | | || Sbjct 89862 GAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGACCACTTGTTCACCTCCCT 89803 Query 243633 TGGTTATGAGAAAGT-GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGC 243691 |||| ||| ||| ||||||| | |||||| |||| || ||||| ||||| |||| Sbjct 89802 TGGT-ATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACTGGATGGAACTCATCTCGC 89744 Query 243692 TTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGA 243751 | ||||| || || ||||||||||| ||||| ||| | || || ||| | ||||| | Sbjct 89743 TCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAATACCAAAAGGCGGGTGTTA 89684 Query 243752 TGAA 243755 |||| Sbjct 89683 TGAA 89680 >seq15 Length=511330 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 333304 CGTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTG 333363 ||||||| | || ||||||||||||| || |||||||| |||| |||| |||||| | Sbjct 117007 CGTCAAGTTT-TCCTTGTCTTCACCGGTGGAGAAACGCCATCGGATGTACTCGTTGGGCG 117065 Query 333364 TCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCA 333423 || |||| | || | ||||| ||||||||| || ||||| || ||||| || |||| Sbjct 117066 TCTTGTCCAAGTGCTGCTCGACGTGGTGGAACGCGTGCTGCGCGACGTACGCGTAGCGCA 117125 Query 333424 TATTTGGATG 333433 |||| || || Sbjct 117126 TATTCGGGTG 117135 >seq6 Length=793623 Score = 86.0 bits (94), Expect = 1e-11 Identities = 185/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 333723 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 333782 |||| ||||||||||||| || || | ||| ||| ||||||| ||| ||| || Sbjct 617836 TTCTCGACGAACTCGGACAAGTTGCCTCGGAACTGCTTGAGCTTTAAGTT---TTC--AA 617782 Query 333783 TG--GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 333840 || ||| || | |||| || ||||| ||| |||| |||||| || || | |||| Sbjct 617781 TGCTGATGATGTTGTTGCACACGCGGTCGACGAAACCGGTGTCGTGCGAGACCAGGACGC 617722 Query 333841 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAA 333900 ||| ||||| | ||| ||| ||| || | |||| | ||||| ||| | Sbjct 617721 ACGTGACGTCGGTGAGGGATTTCAAGTACTCCTCGACCCACTTTACGTTCATCACGTCCA 617662 Query 333901 GATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 333960 || || ||||||||||| | ||||| | | ||||| | | ||| ||||| || | Sbjct 617661 AGTGATTCGTCGGCTCGTCCATGAGTAGGATGTCGGCGTTTAAGCACATCGCACGCGCGA 617602 Query 333961 GAGCGAGTTTCATTTTCCACCCTCCTGA-AAGA 333992 | ||||| ||||| |||||| || || |||| Sbjct 617601 GCGCGAGCTTCATGCGCCACCCGCCAGACAAGA 617569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879717387000