Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq13 233 4e-56
seq8 178 3e-39
seq15 96.9 8e-15
seq6 86.0 1e-11
>seq13
Length=549623
Score = 233 bits (258), Expect = 4e-56
Identities = 925/1416 (65%), Gaps = 52/1416 (4%)
Strand=Plus/Minus
Query 297162 CGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGAT-CTTCTCCAGCA 297220
|||| | || ||||| || ||||||||| | ||| | |||| | | | || || ||
Sbjct 20188 CGATGCTGCCGTTGAAGTTTCTATACCACGGGTGCATCT-GACGCGCTTCCTCGCCCTCA 20130
Query 297221 ATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGAC 297280
| || | || | |||| | |||||| || ||| | |||| || | ||||||
Sbjct 20129 AGCACGAGTTTGATGTTGGAGATGATGTCACGCGGGTTGAAGTTAGGAATGCTCGTCGAC 20070
Query 297281 CAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAA 297340
|| || |||||||| || | |||||||| || | | ||||| || || |||
Sbjct 20069 CATCCCGTACCGATGCCTTCGGCGCCATTCACAAGCACGAGCGGAAGCACCGGATAATAG 20010
Query 297341 TACTCTGGTTCGATC--TTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCG 297398
| || || ||||| ||||| | || |||| ||||| ||||| ||| ||||||
Sbjct 20009 AAGTCCGGCTCGATACGTTGTC--CATCTTCATCAAGATAGTTCAGCAGAGCATCGTCGC 19952
Query 297399 TATCGACGAAAACCTGTCG--AG-TCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCAC 297455
|| ||||| | || || ||| | | ||| ||||| || || |||| |
Sbjct 19951 ACTCCGGGAAAATCGCACGGCAGATCTCATG---CAGGCGAGTGAAGATGTAACGTGGGC 19895
Query 297456 TCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGT 297515
| |||||||||||||| || ||||| | || ||| || || || ||||| | | |||
Sbjct 19894 TTGCGTGATCCTTACCGCCTTGCAAACGCGTACCAAATTGACCGCTCGGCACGAGCAAGT 19835
Query 297516 TGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGC-AGAGAT 297574
||||||| || ||||| |||| || || | ||| ||||||||| | || || ||
Sbjct 19834 TGATGTTGTTCGAACCGACGAAATCTTGCGCCAAGTTGACGATGGTCA-TCGCGAGTGAA 19776
Query 297575 GCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 297634
|||||||| || ||||| ||| ||||| | || || ||||| ||||| || || ||
Sbjct 19775 GCTTCGCCGTGATGATACGCGGAGTGCTCCGAGACATAGCCGCTCAACTGCGCGACTTTG 19716
Query 297635 ACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTG 297694
| || | | | | ||||||||||| ||| | | || || ||||| || || |||
Sbjct 19715 ATATCCGACTTGAGCTTGCGCTTGAAGCATGAGAAGAGAACCTTGCGTTGTGAGGGCTTG 19656
Query 297695 AAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGT 297754
|| || || || | |||||| ||| || || | ||||||||||| |||
Sbjct 19655 AAGCCGTCCACCATGCTCGGAATCGAGCGTAACAAGTCAGCTCTAGAGAACAAAATGAGT 19596
Query 297755 TCCTTGTCGATGAAGTCG--GGAACGGGAA---CCTCGGGCTTCTTGTGGTCAAG-TTGA 297808
||||||| ||| || ||| | | | ||| |||| || || | |||| ||
Sbjct 19595 TCCTTGTTGATAAACTCGTCGTATC--GAATCGCCTC--GCCGCTCATATCCAAGAATG- 19541
Query 297809 TTTCCTGGTTCGTATGCCGTCATCCACTCCTTGCGATCCTCGGCTCGTGACTTGTTGAAA 297868
| ||||| ||||| || ||| ||| | |||||||||||| | || |||| ||||
Sbjct 19540 -TGCCTGGCTCGTACGCATTCAGCCAAGCTTTGCGATCCTCGACACGCTTCTTGCTGAAC 19482
Query 297869 GAACGGTCAATGAGCTCTCCG---GAATCGGAAGTCCACATAAACGTCTTCATGAGAGAC 297925
|| ||| || | || ||| |||| ||| || || |||| | |
Sbjct 19481 GACATGTCGATCAAGTCACCGTCACCATCGCTTTCCCAGATGAAATTCTTGCGGTGGTGA 19422
Query 297926 TTCAGATTGCTGAAGTATTTTTTGGCATC-TGCACTGGAACTCGTACCAAGCCCCTTAAA 297984
| ||| |||||| | ||||| || | | || | ||||||||||| ||||| |
Sbjct 19421 TCAAGAGACGCGAAGTACTCCTTGGCTTCATTCGCT-GTGCTCGTACCAAGACCCTTGTA 19363
Query 297985 ATACTTGGTCGTCCATTTCTTCATATCTTGTGTCTTC----ACGAAGTCTTCGAAGTCAG 298040
|||||| | ||||| | |||| || | | ||||| ||| | || |
Sbjct 19362 GTACTTGATGCTCCATCCAGCCGAGCCTTGGTTCGCCTCCTTCCAAGTC-TCGTACTCGG 19304
Query 298041 GAAGACTG-AAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACTACGATAGGCGTGATG 298099
| | || | || || |||| | || ||||| | || | ||| |||||||||
Sbjct 19303 GCAACGTGTAGAACACCTTCGACTGC-TTCCCCTTGGTCGCCTTGATGATCGGCGTGATG 19245
Query 298100 AACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAA-ACAGCTATGGAAAAAGTT 298158
|||| ||| || || ||||| | || ||| ||||| ||| || || |||||
Sbjct 19244 AACTCGAGCAAAAAACCAGGAATCTTAAGCAGAGATGGGAAGTGAGC-GTGCAAGAAGTT 19186
Query 298159 CATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATG 298218
|||| ||||| |||||||| || ||| ||| ||| ||||||||||| | |
Sbjct 19185 GATGAGAAGACCCTTAATGTGAGAACCATCATGATCTTGGTCTGTCATGATCATGAGCTT 19126
Query 298219 ACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGAATTTG 298278
||||||||| | ||| | | | |||| | || ||| || || |||||||||||
Sbjct 19125 ACCGTAACGCAACGATTTGGCGCTATCGTACTCCTTGCCGTGCTGCAGACCGAGAATTTG 19066
Query 298279 TTTGAGCGCTG-TGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GATGCATCGCGGACA 298336
|||| | || ||||||| |||| || |||| | | || | || |||||||| ||
Sbjct 19065 CTTGA-TGTTGTTGATTTCGGCGTTGTTTTTGAT-TTGGTCATGCGAAGCATCGCGCACG 19008
Query 298337 TTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGC 298396
|||| ||||| |||||||| ||||| || ||||| | || | || || ||||| ||
Sbjct 19007 TTCAGAAGTTTACCACGAAGCGGGAAGACACCATACTTGTCTCTGCCAACGACGGAGAGA 18948
Query 298397 CCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATTTTG 298456
|| | || || | | || |||||||| || || ||||| | ||| |||
Sbjct 18947 CCGCTCACAGCGAGCGCCTTGGCAGAATCCCCTTCGGTGAGAATCAAAGT--ACAAGACT 18890
Query 298457 CTGTTATTCGTTCCAGC-CCAT--GTAGCATCGTTGAGTTTGGGAATTCCAGTCACTCG- 298512
| | |||| |||| | ||| | || || | ||| || || ||||| |||| ||
Sbjct 18889 CAGAGTTTCG-TCCACCGGCATCGTTGGCGTCATCGAGCTTCGGGATTCCCGTCAGACGT 18831
Query 298513 GATCTTCTTGGTACCGTCGGTCTTCTTCAGCTCTTT 298548
|| | ||||| |||||| ||||||||||| || ||
Sbjct 18830 GAGC-GCTTGGCACCGTCAGTCTTCTTCAGTTCCTT 18796
>seq8
Length=717457
Score = 178 bits (196), Expect = 3e-39
Identities = 368/544 (68%), Gaps = 8/544 (1%)
Strand=Plus/Minus
Query 243216 CGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGA 243275
||| ||||| | ||| || ||| | || ||||| | ||||| ||||||| | ||
Sbjct 90219 CGCTATCGAGACCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGTGGATTGA 90160
Query 243276 ACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTT 243335
|| | | || ||||| |||||||| | || | | |||| |||| ||||| | ||
Sbjct 90159 CTCCAGCGACTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTATCTTCTT 90100
Query 243336 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGG 243395
|| || |||||| |||||| ||||| ||| ||| | ||||| || |
Sbjct 90099 CTCTGGTTCGTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCGGGTTTGAC 90040
Query 243396 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTAT 243455
| || |||||| ||||| |||||| |||||| | |||| | || | | || |
Sbjct 90039 CTTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTTGCTTGCCTCTT 89980
Query 243456 GTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAAC---AAATCATCACAGA 243512
|| || |||| | ||||||| | |||| ||| | | || |||| ||
Sbjct 89979 ATACCAAATGCTCAACAACAAGC---CGGACGAAGAAGTCGTGCGTAAGATTGTCACCGA 89923
Query 243513 AGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCAT 243572
||| ||||| | ||| ||||| ||| | |||||| || |||| ||| ||| |||| ||
Sbjct 89922 AGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCTTCCGTGCGCGCTCGTTGGTAT 89863
Query 243573 GAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCT 243632
|||| | | | ||| | | ||||| |||| ||| ||||||| | | |||| | | ||
Sbjct 89862 GAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGACCACTTGTTCACCTCCCT 89803
Query 243633 TGGTTATGAGAAAGT-GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGC 243691
|||| ||| ||| ||||||| | |||||| |||| || ||||| ||||| ||||
Sbjct 89802 TGGT-ATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACTGGATGGAACTCATCTCGC 89744
Query 243692 TTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGA 243751
| ||||| || || ||||||||||| ||||| ||| | || || ||| | ||||| |
Sbjct 89743 TCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAATACCAAAAGGCGGGTGTTA 89684
Query 243752 TGAA 243755
||||
Sbjct 89683 TGAA 89680
>seq15
Length=511330
Score = 96.9 bits (106), Expect = 8e-15
Identities = 100/130 (77%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 333304 CGTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTG 333363
||||||| | || ||||||||||||| || |||||||| |||| |||| |||||| |
Sbjct 117007 CGTCAAGTTT-TCCTTGTCTTCACCGGTGGAGAAACGCCATCGGATGTACTCGTTGGGCG 117065
Query 333364 TCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCA 333423
|| |||| | || | ||||| ||||||||| || ||||| || ||||| || ||||
Sbjct 117066 TCTTGTCCAAGTGCTGCTCGACGTGGTGGAACGCGTGCTGCGCGACGTACGCGTAGCGCA 117125
Query 333424 TATTTGGATG 333433
|||| || ||
Sbjct 117126 TATTCGGGTG 117135
>seq6
Length=793623
Score = 86.0 bits (94), Expect = 1e-11
Identities = 185/273 (68%), Gaps = 8/273 (3%)
Strand=Plus/Minus
Query 333723 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 333782
|||| ||||||||||||| || || | ||| ||| ||||||| ||| ||| ||
Sbjct 617836 TTCTCGACGAACTCGGACAAGTTGCCTCGGAACTGCTTGAGCTTTAAGTT---TTC--AA 617782
Query 333783 TG--GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 333840
|| ||| || | |||| || ||||| ||| |||| |||||| || || | ||||
Sbjct 617781 TGCTGATGATGTTGTTGCACACGCGGTCGACGAAACCGGTGTCGTGCGAGACCAGGACGC 617722
Query 333841 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAA 333900
||| ||||| | ||| ||| ||| || | |||| | ||||| ||| |
Sbjct 617721 ACGTGACGTCGGTGAGGGATTTCAAGTACTCCTCGACCCACTTTACGTTCATCACGTCCA 617662
Query 333901 GATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 333960
|| || ||||||||||| | ||||| | | ||||| | | ||| ||||| || |
Sbjct 617661 AGTGATTCGTCGGCTCGTCCATGAGTAGGATGTCGGCGTTTAAGCACATCGCACGCGCGA 617602
Query 333961 GAGCGAGTTTCATTTTCCACCCTCCTGA-AAGA 333992
| ||||| ||||| |||||| || || ||||
Sbjct 617601 GCGCGAGCTTCATGCGCCACCCGCCAGACAAGA 617569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879717387000
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