Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq12 118 1e-21
seq8 82.4 8e-11
>seq12
Length=542657
Score = 118 bits (130), Expect = 1e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050
|| || | |||||| || | ||| |||||| || || ||||| || |||| ||| ||
Sbjct 189335 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189276
Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110
|||| || ||||||||||| ||||| || | || ||||| || | || | || |||
Sbjct 189275 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189216
Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 42169
||||| ||| || |||| ||| | | | ||||| || ||||| |||| |||
Sbjct 189215 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189157
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| |||||||| |||||||| || |||||||||||
Sbjct 189156 AATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118
Score = 114 bits (126), Expect = 1e-20
Identities = 168/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034
||| || || || | || || | |||||| || | ||| |||||| || || |||||
Sbjct 189807 TTACCGGCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTA 189748
Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| |||| ||| || |||| || ||||||||||| ||||| || | || ||||| ||
Sbjct 189747 GTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATC 189688
Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 42153
| || | || |||||||| ||| || |||| ||| | | | ||||| |
Sbjct 189687 CGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGG 189629
Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| ||||| |||| ||| ||||| || ||||| |||||||| || |||||||||||
Sbjct 189628 ACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574
Score = 113 bits (124), Expect = 5e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050
|| || | |||||| || | ||| |||||| || || ||||| || |||| ||| ||
Sbjct 189563 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189504
Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110
|||| || ||||||||||| ||||| || | || ||||| || | || | || |||
Sbjct 189503 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189444
Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 42169
||||| ||| || |||| ||| | | | ||||| || ||||| |||| |||
Sbjct 189443 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189385
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || ||||| |||||||| || |||||||||||
Sbjct 189384 AATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346
>seq8
Length=717457
Score = 82.4 bits (90), Expect = 8e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| |||| || ||||||||||| || | || ||||||||| || |||||||| ||
Sbjct 310649 ACCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGC 310590
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || |||| || |||||||| || ||||| || | || ||||| || | ||
Sbjct 310589 CAACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGG 310530
Query 42101 CACGCTCTCCTTGTC 42115
| || |||||| ||
Sbjct 310529 GATGCCCTCCTTATC 310515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212664196800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |