Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12 118 1e-21 seq8 82.4 8e-11 >seq12 Length=542657 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || || | |||||| || | ||| |||||| || || ||||| || |||| ||| || Sbjct 189335 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189276 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| || ||||||||||| ||||| || | || ||||| || | || | || ||| Sbjct 189275 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189216 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 42169 ||||| ||| || |||| ||| | | | ||||| || ||||| |||| ||| Sbjct 189215 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189157 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| |||||||| |||||||| || ||||||||||| Sbjct 189156 AATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 ||| || || || | || || | |||||| || | ||| |||||| || || ||||| Sbjct 189807 TTACCGGCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTA 189748 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || |||| ||| || |||| || ||||||||||| ||||| || | || ||||| || Sbjct 189747 GTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATC 189688 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 42153 | || | || |||||||| ||| || |||| ||| | | | ||||| | Sbjct 189687 CGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGG 189629 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| |||| ||| ||||| || ||||| |||||||| || ||||||||||| Sbjct 189628 ACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || || | |||||| || | ||| |||||| || || ||||| || |||| ||| || Sbjct 189563 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189504 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| || ||||||||||| ||||| || | || ||||| || | || | || ||| Sbjct 189503 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189444 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 42169 ||||| ||| || |||| ||| | | | ||||| || ||||| |||| ||| Sbjct 189443 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189385 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| |||||||| || ||||||||||| Sbjct 189384 AATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 >seq8 Length=717457 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| || ||||||||||| || | || ||||||||| || |||||||| || Sbjct 310649 ACCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGC 310590 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| || ||||| || | || ||||| || | || Sbjct 310589 CAACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGG 310530 Query 42101 CACGCTCTCCTTGTC 42115 | || |||||| || Sbjct 310529 GATGCCCTCCTTATC 310515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212664196800