Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 107 2e-18 seq20 93.3 4e-14 seq7 91.5 1e-13 >seq12 Length=542657 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||| || | || || || | | |||||||| || |||||||||||| Sbjct 189573 GCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 189514 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||||||||| || ||||||| |||| | ||| || || ||||| || Sbjct 189513 CAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGG 189454 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | |||||||| Sbjct 189453 GATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCAC 189394 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| ||| | || ||||| || || || || || || || |||||| Sbjct 189393 TTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCATG 189345 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||| || | || || || | | |||||||| || |||||||||||| Sbjct 189801 GCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 189742 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||||||||| || ||||||| |||| | ||| || || ||||| || Sbjct 189741 CAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGG 189682 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | |||||||| Sbjct 189681 GATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCAC 189622 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| ||| | || ||||| || || || || || || || |||||| Sbjct 189621 TTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCATG 189573 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||| || | || || || | | |||||||| || |||||||||||| Sbjct 189345 GCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 189286 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||||||||| || ||||||| |||| | ||| || || ||||| || Sbjct 189285 CAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGG 189226 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | |||||||| Sbjct 189225 GATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCAC 189166 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| ||| | || || || || || || || || || || |||||| Sbjct 189165 TTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCATG 189117 >seq20 Length=165357 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 57301 GCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCG 57360 || |||||||| || | ||||| |||| ||||| || | | || |||||||| || Sbjct 75701 GCGTCGACGTTTCCGAGATCGCCCGCGTGTCGCACCGCATCCGTCGGCGCGCCGTGATCC 75760 Query 57361 CTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAAC 57420 | | | |||||||||||| |||| ||| |||| ||||| ||||||| |||||| Sbjct 75761 ATCTTGTTCGGGTTAAAGTGCGGTCCCGTGGACATGCACCCGTTCGTGGTGTCACCGAAC 75820 Query 57421 TCGTGAACGTGAAATCCGTGC 57441 ||||||| ||| || |||||| Sbjct 75821 TCGTGAATGTGCAAACCGTGC 75841 >seq7 Length=770246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| ||||| || || || | | ||||||||||| |||||||||||| Sbjct 134647 CCCCCGCGCAAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCG 134588 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||||||| ||||| | |||| ||||| || || ||||| || Sbjct 134587 AGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGG 134528 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || || | | || | |||||| | ||||||||| Sbjct 134527 ATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 134468 Query 138568 TCGACCGTCAGCGTTTTACCAGTCA 138592 || | || | || ||||| |||| Sbjct 134467 TCCAAGGTGATGGTCTTACCCGTCA 134443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262275934400