Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq8 129 9e-25
seq1 107 3e-18
>seq8
Length=717457
Score = 129 bits (142), Expect = 9e-25
Identities = 389/589 (66%), Gaps = 24/589 (4%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||| | | || || |||||| | | || |||||
Sbjct 89715 CTTCTCGAAGAAGTTGGTCTTGCCTTGGAGCGAGATGAGTTCCATCCAGTCAAACGGGTT 89774
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| | || || ||| || | || || | | | ||| ||| || || ||||
Sbjct 89775 CGCCGTGTTGTACTCCTTGGGCATACCAAGGGAGGTGAACAAGTGGTCGGCGACGTATTC 89834
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCCG 159827
|||||| | |||| | ||| || || | ||| | |||| || | ||
Sbjct 89835 AATGTAGTCGCTCATCATACCGGCGTTCATACCAACGAGCGCGCACGGA-AGAGAGTCGC 89893
Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT---GCGAGACACGTTCGT 159884
||| ||||||||||| ||||| ||||||||||| ||||||| || ||| |||||
Sbjct 89894 ACACGAACTCCTTCTCGATCTCAACCGCTTCGGTGACAATCTTACGCACGACTTCTTCGT 89953
Query 159885 ACCCCGGCTTGCCC---AAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941
|||||||| | || |||| ||| |||||| |||||||| | |||||
Sbjct 89954 ---CCGGCTTGTTGTTGAGCATTTGGTA--TAA----GAGGCAAGCAAAGTCACGGTGCA 90004
Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001
||||| || |||||||||| ||||||||| | | | | |||||||| | || |||
Sbjct 90005 AGCCCTCATCGCGAGAGATGAGCTCGTTGGAGAAGGTCAAACCCGGCATAAGACCGCGCT 90064
Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAA-GCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060
|| ||||| | |||| ||| || | ||| || ||||| ||||| | | |||
Sbjct 90065 TCTTAAGCCAGTAGATGGA-GCAGAACGAACCAGAGAAGAAGATACCCTCAATGCACGCG 90123
Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120
||||||| || | ||| |||| ||| || ||| |||| ||||| | |||||
Sbjct 90124 AACGCCAGCAGACGCTCGGCAAACGAGTCGCTGGAGTCAA---TCCACTTCAACGCCCAG 90180
Query 160121 TCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180
||||||||||| | ||| || ||| ||||| ||| ||||| | || |||
Sbjct 90181 TCAGCCTTCTTCTTAACGCATGGGATGGTCTCGATAGCGCGGAACAAGTGGCTCTTCTCG 90240
Query 160181 TTCACATCCTTGATCAGAGTAG-CAATCAGCTTCGAGTACATTTCTGCG 160228
| |||||||| | | | | | |||| | || ||||||||||||
Sbjct 90241 GCCGGATCCTTGA-CGTACTGGTCGATCAACAAGGAATACATTTCTGCG 90288
>seq1
Length=1096037
Score = 107 bits (118), Expect = 3e-18
Identities = 334/505 (66%), Gaps = 19/505 (4%)
Strand=Plus/Minus
Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892
||| ||| ||| || ||||||| ||||| | | | || | | | ||| |||||
Sbjct 15725 CTTGGTCGCGTCGACAGTGAACTTGATGGCATCCGCAGCCGCGCGAGAGCGCAGGTAGTA 15666
Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952
|||||||||||| |||||||||| |||| |||| | ||||| ||| | || || |
Sbjct 15665 CATGCCGGTCTTCAGGCCCTTCTTCCACGCGTAAAAGTGCAAGGAGGTGAGCTTACCGCT 15606
Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011
||| || ||| |||||| | ||| | ||||| || || ||| || ||||| | ||
Sbjct 15605 GTTCGGATCGCTCATGTGCACGTTGAAGGACTGAGACTGATCAATG-AACGCGCCTCTAT 15547
Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071
| |||||||| | | || ||| |||||||||||||||||| | | || ||
Sbjct 15546 CCGCGGCCATGTCAACAAGAACACGTTGCTTGATCTCCCACACCGTCTTGTAAATGT-TC 15488
Query 204072 T----GGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAG 204126
| | ||| || || | ||| ||| || | || ||||||| | || ||
Sbjct 15487 TTCAAGTTGTCCGGA-----ATGT--CCAAGTCTTGCACGGAACCGTTGTTCGAGATGAG 15435
Query 204127 TCTC-ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGA-TCAGCTCCCGCACCAGGTGG 204184
||| || || |||| |||||| | |||| || | | || || || || |||
Sbjct 15434 -CTCGTTCTTCAGCTCCGGATCCCACA-GGCCAAGCTCAGTGAGATCAGACAACAAGTGC 15377
Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244
|||| | || ||| || ||||||| ||| | || | | | | ||| ||| |
Sbjct 15376 TGGTTCACGACGGTAAACTCACCGGACAACACGCGGCGAGCGTAGATGTTCGACGTGTAC 15317
Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304
|| ||||| |||||||||||| | ||| |||| || || || ||||| |||||
Sbjct 15316 GGCTCGAAGCACTCGTTGTTGCCAAGAATTTGAGACGTAGACGCGGTCGGCATCGGAGCG 15257
Query 204305 AGGAGCAGGGAGTTGCGCACACCGT 204329
| ||||| |||||||| || ||||
Sbjct 15256 ACGAGCAAAGAGTTGCGAACGCCGT 15232
Score = 102 bits (112), Expect = 1e-16
Identities = 232/349 (66%), Gaps = 0/349 (0%)
Strand=Plus/Minus
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|| |||||||| |||| | ||||||||||||| |||||||| || || | | | ||
Sbjct 14405 CTTCATAAACAAGTCGTTCGTCCACAGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTC 14346
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284
| || ||||||| |||||| ||||| | ||||| |||||||||||||| |
Sbjct 14345 CTTACCGTGGTTCTTACGCAAGTCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAG 14286
Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344
| | ||| | || || | ||| ||||| |||||||| ||||| | | |
Sbjct 14285 GTAGATGGCGAACGCTCCCTTGCGCTTACCACCACCTTGGTCCACGTAGCGAGCCGTGTC 14226
Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGC 205404
|||||| || ||||||||||| | | ||||| | || ||||| |||| |||
Sbjct 14225 GTTGAACACACGCAGCATCGGAATGATGCCGTTCGACGTTCCGTTGGTGCCTCGAATGTA 14166
Query 205405 CGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGAT 205464
|||| ||| | | | | ||||| | || || || || | | | || | ||
Sbjct 14165 AGAGCTCGTAGCTCGGATATCGTGGATGGACAAACCGATACCTCCGGCAGATTTTGAAAT 14106
Query 205465 CTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513
|||||||| | ||| ||| ||| ||||| |||||||||| |||
Sbjct 14105 ACACGCGCACTCCTTCAGCGTGTCGTAAATGCCCTCGATGGAATCTTCC 14057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795155001211200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |