Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq8 129 9e-25 seq1 107 3e-18 >seq8 Length=717457 Score = 129 bits (142), Expect = 9e-25 Identities = 389/589 (66%), Gaps = 24/589 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | || || |||||| | | || ||||| Sbjct 89715 CTTCTCGAAGAAGTTGGTCTTGCCTTGGAGCGAGATGAGTTCCATCCAGTCAAACGGGTT 89774 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | | || || ||| || | || || | | | ||| ||| || || |||| Sbjct 89775 CGCCGTGTTGTACTCCTTGGGCATACCAAGGGAGGTGAACAAGTGGTCGGCGACGTATTC 89834 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCCG 159827 |||||| | |||| | ||| || || | ||| | |||| || | || Sbjct 89835 AATGTAGTCGCTCATCATACCGGCGTTCATACCAACGAGCGCGCACGGA-AGAGAGTCGC 89893 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT---GCGAGACACGTTCGT 159884 ||| ||||||||||| ||||| ||||||||||| ||||||| || ||| ||||| Sbjct 89894 ACACGAACTCCTTCTCGATCTCAACCGCTTCGGTGACAATCTTACGCACGACTTCTTCGT 89953 Query 159885 ACCCCGGCTTGCCC---AAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 |||||||| | || |||| ||| |||||| |||||||| | ||||| Sbjct 89954 ---CCGGCTTGTTGTTGAGCATTTGGTA--TAA----GAGGCAAGCAAAGTCACGGTGCA 90004 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 ||||| || |||||||||| ||||||||| | | | | |||||||| | || ||| Sbjct 90005 AGCCCTCATCGCGAGAGATGAGCTCGTTGGAGAAGGTCAAACCCGGCATAAGACCGCGCT 90064 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAA-GCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| | |||| ||| || | ||| || ||||| ||||| | | ||| Sbjct 90065 TCTTAAGCCAGTAGATGGA-GCAGAACGAACCAGAGAAGAAGATACCCTCAATGCACGCG 90123 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 ||||||| || | ||| |||| ||| || ||| |||| ||||| | ||||| Sbjct 90124 AACGCCAGCAGACGCTCGGCAAACGAGTCGCTGGAGTCAA---TCCACTTCAACGCCCAG 90180 Query 160121 TCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180 ||||||||||| | ||| || ||| ||||| ||| ||||| | || ||| Sbjct 90181 TCAGCCTTCTTCTTAACGCATGGGATGGTCTCGATAGCGCGGAACAAGTGGCTCTTCTCG 90240 Query 160181 TTCACATCCTTGATCAGAGTAG-CAATCAGCTTCGAGTACATTTCTGCG 160228 | |||||||| | | | | | |||| | || |||||||||||| Sbjct 90241 GCCGGATCCTTGA-CGTACTGGTCGATCAACAAGGAATACATTTCTGCG 90288 >seq1 Length=1096037 Score = 107 bits (118), Expect = 3e-18 Identities = 334/505 (66%), Gaps = 19/505 (4%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 ||| ||| ||| || ||||||| ||||| | | | || | | | ||| ||||| Sbjct 15725 CTTGGTCGCGTCGACAGTGAACTTGATGGCATCCGCAGCCGCGCGAGAGCGCAGGTAGTA 15666 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||||||||| |||||||||| |||| |||| | ||||| ||| | || || | Sbjct 15665 CATGCCGGTCTTCAGGCCCTTCTTCCACGCGTAAAAGTGCAAGGAGGTGAGCTTACCGCT 15606 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 ||| || ||| |||||| | ||| | ||||| || || ||| || ||||| | || Sbjct 15605 GTTCGGATCGCTCATGTGCACGTTGAAGGACTGAGACTGATCAATG-AACGCGCCTCTAT 15547 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | |||||||| | | || ||| |||||||||||||||||| | | || || Sbjct 15546 CCGCGGCCATGTCAACAAGAACACGTTGCTTGATCTCCCACACCGTCTTGTAAATGT-TC 15488 Query 204072 T----GGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAG 204126 | | ||| || || | ||| ||| || | || ||||||| | || || Sbjct 15487 TTCAAGTTGTCCGGA-----ATGT--CCAAGTCTTGCACGGAACCGTTGTTCGAGATGAG 15435 Query 204127 TCTC-ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGA-TCAGCTCCCGCACCAGGTGG 204184 ||| || || |||| |||||| | |||| || | | || || || || ||| Sbjct 15434 -CTCGTTCTTCAGCTCCGGATCCCACA-GGCCAAGCTCAGTGAGATCAGACAACAAGTGC 15377 Query 204185 GGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAAT 204244 |||| | || ||| || ||||||| ||| | || | | | | ||| ||| | Sbjct 15376 TGGTTCACGACGGTAAACTCACCGGACAACACGCGGCGAGCGTAGATGTTCGACGTGTAC 15317 Query 204245 GGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCC 204304 || ||||| |||||||||||| | ||| |||| || || || ||||| ||||| Sbjct 15316 GGCTCGAAGCACTCGTTGTTGCCAAGAATTTGAGACGTAGACGCGGTCGGCATCGGAGCG 15257 Query 204305 AGGAGCAGGGAGTTGCGCACACCGT 204329 | ||||| |||||||| || |||| Sbjct 15256 ACGAGCAAAGAGTTGCGAACGCCGT 15232 Score = 102 bits (112), Expect = 1e-16 Identities = 232/349 (66%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || |||||||| |||| | ||||||||||||| |||||||| || || | | | || Sbjct 14405 CTTCATAAACAAGTCGTTCGTCCACAGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTC 14346 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284 | || ||||||| |||||| ||||| | ||||| |||||||||||||| | Sbjct 14345 CTTACCGTGGTTCTTACGCAAGTCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAG 14286 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | | ||| | || || | ||| ||||| |||||||| ||||| | | | Sbjct 14285 GTAGATGGCGAACGCTCCCTTGCGCTTACCACCACCTTGGTCCACGTAGCGAGCCGTGTC 14226 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGC 205404 |||||| || ||||||||||| | | ||||| | || ||||| |||| ||| Sbjct 14225 GTTGAACACACGCAGCATCGGAATGATGCCGTTCGACGTTCCGTTGGTGCCTCGAATGTA 14166 Query 205405 CGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGAT 205464 |||| ||| | | | | ||||| | || || || || | | | || | || Sbjct 14165 AGAGCTCGTAGCTCGGATATCGTGGATGGACAAACCGATACCTCCGGCAGATTTTGAAAT 14106 Query 205465 CTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513 |||||||| | ||| ||| ||| ||||| |||||||||| ||| Sbjct 14105 ACACGCGCACTCCTTCAGCGTGTCGTAAATGCCCTCGATGGAATCTTCC 14057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155001211200