Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq12 143 3e-29
seq8 113 5e-20
seq7 109 6e-19
>seq12
Length=542657
Score = 143 bits (158), Expect = 3e-29
Identities = 149/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| | |||||| |||| ||||||||||| ||||||||
Sbjct 189309 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 189250
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || ||||| || | ||| | || |||||||| ||||||| ||||| |||
Sbjct 189249 GATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGT 189191
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || ||||| || | ||| ||||| |||||||| ||||| || |
Sbjct 189190 TGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCA 189131
Query 46581 CAAAGATTTGCAT 46593
| |||||||||||
Sbjct 189130 CGAAGATTTGCAT 189118
Score = 138 bits (152), Expect = 1e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| | |||||| |||| ||||||||||| ||||||||
Sbjct 189537 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 189478
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || ||||| || | ||| | || |||||||| ||||||| ||||| |||
Sbjct 189477 GATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGT 189419
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || ||||| || | ||| ||||| || ||||| ||||| || |
Sbjct 189418 TGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCA 189359
Query 46581 CAAAGATTTGCAT 46593
| |||||||||||
Sbjct 189358 CGAAGATTTGCAT 189346
Score = 138 bits (152), Expect = 1e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| | |||||| |||| ||||||||||| ||||||||
Sbjct 189765 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 189706
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || ||||| || | ||| | || |||||||| ||||||| ||||| |||
Sbjct 189705 GATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGT 189647
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || ||||| || | ||| ||||| || ||||| ||||| || |
Sbjct 189646 TGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCA 189587
Query 46581 CAAAGATTTGCAT 46593
| |||||||||||
Sbjct 189586 CGAAGATTTGCAT 189574
>seq8
Length=717457
Score = 113 bits (124), Expect = 5e-20
Identities = 155/213 (73%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| |||| || |||||||||| || | ||| |||||||||||| ||||| || |
Sbjct 310648 CCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCC 310589
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||||| |||| ||||||||||| || ||||| ||||| || ||||| || | |||
Sbjct 310588 AACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGG 310529
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| || |||||| || ||||||| ||| | ||| | | | ||||| || |||||
Sbjct 310528 ATGCCCTCCTTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 310470
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCA--GCGTT 46576
|||| |||||||| || || |||| |||||
Sbjct 310469 CTCCAAGGTGATGGTCTTACCAGTCACTGCGTT 310437
>seq7
Length=770246
Score = 109 bits (120), Expect = 6e-19
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435
|| |||||||||| || | || |||||||||||| |||||||||| || |||||
Sbjct 134638 AAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGG 134579
Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495
|||| ||||| ||||| || ||||| |||| || ||||| || | ||| | | ||||
Sbjct 134578 CCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGGATCCCCTCC 134519
Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGT 46554
|| || ||||||| ||| | ||| | | | ||||| || ||||| |||| ||
Sbjct 134518 TTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGT 134460
Query 46555 GATGGTTTTGCCCGTCA 46571
|||||| || |||||||
Sbjct 134459 GATGGTCTTACCCGTCA 134443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238258690400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |