Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12 143 3e-29 seq8 113 5e-20 seq7 109 6e-19 >seq12 Length=542657 Score = 143 bits (158), Expect = 3e-29 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | |||||| |||| ||||||||||| |||||||| Sbjct 189309 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 189250 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || ||||| || | ||| | || |||||||| ||||||| ||||| ||| Sbjct 189249 GATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGT 189191 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | ||| ||||| |||||||| ||||| || | Sbjct 189190 TGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCA 189131 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 189130 CGAAGATTTGCAT 189118 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | |||||| |||| ||||||||||| |||||||| Sbjct 189537 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 189478 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || ||||| || | ||| | || |||||||| ||||||| ||||| ||| Sbjct 189477 GATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGT 189419 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | ||| ||||| || ||||| ||||| || | Sbjct 189418 TGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCA 189359 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 189358 CGAAGATTTGCAT 189346 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | |||||| |||| ||||||||||| |||||||| Sbjct 189765 CTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 189706 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || ||||| || | ||| | || |||||||| ||||||| ||||| ||| Sbjct 189705 GATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGT 189647 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | ||| ||||| || ||||| ||||| || | Sbjct 189646 TGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCA 189587 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 189586 CGAAGATTTGCAT 189574 >seq8 Length=717457 Score = 113 bits (124), Expect = 5e-20 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| || |||||||||| || | ||| |||||||||||| ||||| || | Sbjct 310648 CCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCC 310589 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| |||| ||||||||||| || ||||| ||||| || ||||| || | ||| Sbjct 310588 AACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGG 310529 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||| || ||||||| ||| | ||| | | | ||||| || ||||| Sbjct 310528 ATGCCCTCCTTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 310470 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCA--GCGTT 46576 |||| |||||||| || || |||| ||||| Sbjct 310469 CTCCAAGGTGATGGTCTTACCAGTCACTGCGTT 310437 >seq7 Length=770246 Score = 109 bits (120), Expect = 6e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||||||||| || | || |||||||||||| |||||||||| || ||||| Sbjct 134638 AAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGG 134579 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| ||||| ||||| || ||||| |||| || ||||| || | ||| | | |||| Sbjct 134578 CCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGGATCCCCTCC 134519 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGT 46554 || || ||||||| ||| | ||| | | | ||||| || ||||| |||| || Sbjct 134518 TTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGT 134460 Query 46555 GATGGTTTTGCCCGTCA 46571 |||||| || ||||||| Sbjct 134459 GATGGTCTTACCCGTCA 134443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238258690400