Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12 223 3e-53 seq8 127 2e-24 seq7 113 5e-20 >seq12 Length=542657 Score = 223 bits (246), Expect = 3e-53 Identities = 627/935 (67%), Gaps = 31/935 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||||||| |||||||| | | || | ||||||||| |||| ||| |||| Sbjct 197731 CATCACGCCAGCCTTTTGATACTGATCTACGCGGTGCTCAAAAAAGTTAGCTTTACCCTG 197790 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | ||||||||| ||| |||| || |||||| | | ||| | |||| || | | Sbjct 197791 AAGCGAAATGAGCTCCATCCAATCGAACGGGTTGACGGCGTTAAATAGCTT--TGATGCT 197848 Query 132711 C--AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTAT-TGCGACATGGTTTCGCA 132767 | || | | ||| || | ||| || |||||||||||||| ||| ||| | ||| Sbjct 197849 CCGAGCTGAATGAGTAGTCGGTCCGCGACGAACTCGATGTAAGTGCT-CATCATGTCGGC 197907 Query 132768 ATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCG 132825 ||| | || | || ||| | ||| || || | ||| | || ||| || Sbjct 197908 ATTCATGCCAACGAGCGAGCAACT-CAGAGCGTCACACACGAACTCCTT-CTCAATTTTC 197965 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCG-CGCCGCGCTCGGCCGTTGCACCAA-ATGCT 132883 |||||||| ||||| | || ||| |||| |||| | | | | ||| |||| Sbjct 197966 ACCGCGTCTCCTACGATATGATGAA-GCGTCGCCTCGCTGAGAGGATTCTGCAACATGCC 198024 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 | ||| ||||||||| |||||||| |||||||| ||||| | | ||||| |||||| Sbjct 198025 -GTACAGCAAGCAAGCGAAGTCGCAGTGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGG 198083 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || || ||| |||| | || || ||||| ||||| || |||||| ||| || Sbjct 198084 AGAAGGTTAAACCGCGCATCAATCCTCGCTTTTTCAGCCAGAAGATGGCGCAGAA--TGA 198141 Query 133004 CCGAA--AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || | ||||||| || |||||| |||||| ||||||| | ||| |||| | || Sbjct 198142 CCCACTGAAGAAGATTCCTTCGACGCACGCGAATCCCACCAGCCTTTCGGCGAAGCTCGC 198201 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCA--CGGCATC 133119 || ||| ||||||| | |||||||| || || |||| | | | || ||||| Sbjct 198202 GTC---GCTACCGATCCAATGAAGCGCCCAGTCTGC--TTTCATCGCCACAGTCGGCACT 198256 Query 133120 GTTTCGATGGCGTTCAACAAA-CGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGAT 133178 || | |||||| ||||| |||| || ||||| || | | ||| ||||| | Sbjct 198257 GTGTGAATGGCGCGAAACAATTCGGATTTCTTCTTCGGATCCTTG-ATGTACGTGTCCAA 198315 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 || ||| ||||| || ||| | |||||| || |||| |||||| ||||| || | Sbjct 198316 AAGCAGCGAGTACATCTCGCTGTGAATGTTCTCGATCGCGAGTTGAAATCCGTAGAACGA 198375 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 |||||||| | |||||| || ||| ||| | |||||| ||| || || Sbjct 198376 TCGCGCCTCTGGAAGCTGCACGTCGCTCATGAATCGCGAGCACAGATTCTCGAGAACAAT 198435 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 ||||||||| | ||||||||| |||| |||||| | ||| || |||||| ||||| Sbjct 198436 GCCGTCGCTCGAGGCGAAAAACGCCAACACGTGAGACACGAAGTGCTTCTCGTTCTCGTT 198495 Query 133359 CAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417 | |||| || ||| || ||| | | || || |||||||| | |||||||| Sbjct 198496 C-AGCGTCTGCCAATCCTTATAGTCGTACGTCAAATCAACCTCCTCCGCCGTCCAAAAGC 198554 Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACA- 133476 |||||| || || || ||||| ||| | || || | || ||||| | ||| Sbjct 198555 TCGCCTCCGCCTTCTTATACATCTCCCAAACCCTCGGATGCTTGATCGGAAAGA-GACAG 198613 Query 133477 AACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCGC 133511 || ||| || || || | ||||||||||||||| Sbjct 198614 AATCGGTCCGGATTGTCCCTCAACAGCGGCTCCGC 198648 Score = 125 bits (138), Expect = 7e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || |||||||||||||| ||||| || |||| || ||| || | Sbjct 189118 ATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCG 189177 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | || | || |||| ||||| || || | ||||||| || | Sbjct 189178 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCA-TCCCGCCGGATC 189235 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | ||| || || ||||| || |||| ||||| | |||||||| Sbjct 189236 AGCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACA 189295 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | ||||| || |||||||| || ||| | || ||| Sbjct 189296 ACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189345 Score = 125 bits (138), Expect = 7e-24 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||||||||| || ||||| || |||| || ||| || | Sbjct 189574 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189633 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | || | || |||| ||||| || || | ||||||| || | Sbjct 189634 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCA-TCCCGCCGGATC 189691 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | ||| || || ||||| || |||| ||||| | |||||||| Sbjct 189692 AGCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACA 189751 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCG 38473 ||||||| ||||| | ||||| || |||||||| || ||| | || ||||| Sbjct 189752 ACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGCCG 189803 Score = 122 bits (134), Expect = 9e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||||||||| || ||||| || |||| || ||| || | Sbjct 189346 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189405 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | || | || |||| ||||| || || | ||||||| || | Sbjct 189406 GACACCATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGCA-TCCCGCCGGATC 189463 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | ||| || || ||||| || |||| ||||| | |||||||| Sbjct 189464 AGCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACA 189523 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | ||||| || |||||||| || ||| | || ||| Sbjct 189524 ACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189573 >seq8 Length=717457 Score = 127 bits (140), Expect = 2e-24 Identities = 176/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 |||||||||||| | ||||||||||| || | || ||||| |||||| ||| ||||| Sbjct 89985 GCAAGCAAAGTCACGGTGCAAGCCCTCATCGCGAGAGATGAGCTCGTTGGAGAAGGTCAA 90044 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| || ||||| || || ||||| | |||| | ||| || || ||||| Sbjct 90045 ACCCGGCATAAGACCGCGCTTCTTAAGCCAGTAGATGGAGCAGAACGAACCAGAGAAGAA 90104 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||||| | | |||||| |||| ||| |||||| | |||| | || || | | Sbjct 90105 GATACCCTCAATGCACGCGAACGCCAGCAGACGCTCGGCAAACGAG---TCGCTGGAGTC 90161 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 ||||| || |||||| || ||||| | || ||||| || || || ||||| ||| Sbjct 90162 AATCCACTTCAACGCCCAGTCAGCCTTCTTCTTAACGCATGGGATGGTCTCGATAGCGCG 90221 Query 133134 CAACAA 133139 ||||| Sbjct 90222 GAACAA 90227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || ||||||||| | || || ||| || | |||| | | | |||| | || | Sbjct 310446 ACTGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACG-TGAAGGC 310504 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| || || ||||| || ||||||| | || || || | |||| |||||| | Sbjct 310505 GAAGATCCAAGATAAGGAGGGCAT-CCCGCCGGATCAGCAACGTTTGATTTTCGCGGGGA 310563 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| ||||| | || ||||||||||||||||| | ||||| | Sbjct 310564 AGCAGCTCGAGGACGGCCGCACGTTGGCGGATTACAACATCCAAAAGGAGTCTACGCTCC 310623 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 | |||||| |||| ||| |||| || Sbjct 310624 ACTTGGTGTTGCGCTTGCGAGGTGG 310648 >seq7 Length=770246 Score = 113 bits (124), Expect = 5e-20 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 ||||| || ||||||||| | || || ||| || | |||| | | | |||| | || | Sbjct 134445 ACGGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACG-TGAAGGC 134503 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| || || ||||| || ||||||| | || || || || || | |||||| | Sbjct 134504 GAAGATCCAAGATAAGGAGGGGAT-CCCGCCGGATCAGCAACGTCTGATCTTCGCGGGTA 134562 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | || || || |||| ||||| ||| ||||||||||||||||||||| | ||||| | Sbjct 134563 AGCAACTCGAGGACGGCCGCACGCTCGCCGACTACAACATCCAAAAGGAGTCCACGCTCC 134622 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 | |||||| |||| ||| | || || Sbjct 134623 ACTTGGTGTTGCGCTTGCGCGGGGG 134647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172674956800