Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12 152 1e-31 seq7 123 6e-23 seq8 111 3e-19 >seq12 Length=542657 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| ||||| | ||| | || || |||||||| Sbjct 189321 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTG 189262 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | ||||| || || || || |||||||| |||||||| || || Sbjct 189261 CTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTT 189202 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||||||||| |||||||| || |||| ||||| || || Sbjct 189201 CGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTGCCCGT 189142 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 189141 GAGCGTCTTCACGAAGATTTGCAT 189118 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| ||||| | ||| | || || |||||||| Sbjct 189549 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTG 189490 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | ||||| || || || || |||||||| |||||||| || || Sbjct 189489 CTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTT 189430 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||||||||| |||||||| || |||| ||||| || || Sbjct 189429 CGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTACCCGT 189370 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 189369 GAGCGTCTTCACGAAGATTTGCAT 189346 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| ||||| | ||| | || || |||||||| Sbjct 189777 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTCGAGCTG 189718 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | ||||| || || || || |||||||| |||||||| || || Sbjct 189717 CTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTT 189658 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||||||||| |||||||| || |||| ||||| || || Sbjct 189657 CGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTACCCGT 189598 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 189597 GAGCGTCTTCACGAAGATTTGCAT 189574 >seq7 Length=770246 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| || |||||||| ||||| || ||||| ||||| || || | || || Sbjct 134633 CAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTC 134574 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||| |||||||| |||||||| || ||||| || || || || || || || || || Sbjct 134573 CTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGGATCCCCTCCTTATC 134514 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||| ||||| || ||||||||||| ||||| || | ||| | || Sbjct 134513 TTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGT 134454 Query 195108 CTTTCCTGTCA 195118 ||| || |||| Sbjct 134453 CTTACCCGTCA 134443 >seq8 Length=717457 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| || || ||||| ||||| || |||||||| || | || | || || Sbjct 310634 CAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCCAACGTGCGGCCGTC 310575 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||||||||| || ||||| || | ||||| || || || || ||||| || || || Sbjct 310574 CTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGGATGCCCTCCTTATC 310515 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||| ||||| || ||||||||||| ||||| || | ||| | || Sbjct 310514 TTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGT 310455 Query 195108 CTTTCCTGTCA 195118 ||| || |||| Sbjct 310454 CTTACCAGTCA 310444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481315695340