Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 152 4e-32 >seq1 Length=1096037 Score = 152 bits (168), Expect = 4e-32 Identities = 395/601 (66%), Gaps = 6/601 (1%) Strand=Plus/Minus Query 29790 GAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG 29849 ||| || ||||||||||||| || || | ||| ||||| | |||||| ||| Sbjct 961609 GAGTTGCTTCTTCAGCGGTTCGACATGGTTTGAGTACACGTGCGTGTCTCCACAAACGTG 961550 Query 29850 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909 ||| || || || || | || || || || || |||||| | ||||| || ||||| Sbjct 961549 GACGAAATCGCCAGGCTTGAGGTCGCACACTTGCGCGATCATGCAGGTGAGCAGGGAGTA 961490 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 |||||||| || || || ||||| |||||||| | ||| | |||||| | || || Sbjct 961489 CGACGCGATGTTGAACGGGACGCCGAGACCCATGTCGCACGAGCGCTGGTACATTTGGCA 961430 Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 | || |||| | ||||| ||||| || | |||||||||| || |||||||| Sbjct 961429 GCTCAATTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGAGCCAT 961370 Query 30030 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30089 | || || ||||| || | | |||||| | || || || || Sbjct 961369 TTCCTTTAGCGCTGCCGGATTCCATGCTGTAAGTAAGATGCGACGATCGGTCGGATTATT 961310 Query 30090 CCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT 30149 | |||| || | | | || ||||| || ||| | |||| |||||| || Sbjct 961309 CTTGATCTTGTTGATAACCTCGGCCAATTGATCAACGCCCTTGCCCGTGTAGTCGGCGTG 961250 Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||| || || || || || ||||| ||||| ||||| || || || || || Sbjct 961249 CATGTTCGTGTATTCGGCGCCAAAGTGTCTCCATTGGAAACCGTAAACGGGGCCGAGATC 961190 Query 30210 TCCCTCTTCCCTGTGCTCG---AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30266 ||| | || | ||||| || || | ||||||| | |||| | |||||| | Sbjct 961189 ACCCACCTC---GCGCTCGGTCAACCCGATGGAGTCCAAATACTCTCGGCTTCCGTTGCC 961133 Query 30267 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30326 ||||||||| || | | |||||| | | || || | || || || ||||| Sbjct 961132 GTCCCAGATGTTGATCTTCTTCTCTGCCAACTTGTTCGCATTGGTCTCGCCCGCCACGAA 961073 Query 30327 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 ||| | ||||||||| ||||| | ||| || || | ||||||||| | ||| || || Sbjct 961072 CCATAACAGCTCCTCGGCGACGCCTCGCCAGAAAACACGCTTGGTCGTCAAGAGCGGGAA 961013 Query 30387 C 30387 | Sbjct 961012 C 961012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617500399460