Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq8 127 4e-24
seq12 118 2e-21
>seq8
Length=717457
Score = 127 bits (140), Expect = 4e-24
Identities = 359/539 (67%), Gaps = 18/539 (3%)
Strand=Plus/Plus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
||||| || || || | ||||| |||||||| ||||| || | | ||||||| |||
Sbjct 89698 TGGTATTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCTTGGAGCGAGATGAGTTCC 89757
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959
|| || || ||||| | ||||| ||| || | || || | | || |
Sbjct 89758 ATCCAGTCAAACGGGTTCGCCGTGTTGTACTCCTTGGGCATACCAAGGGAGGTGAACAAG 89817
Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA- 48018
|| || |||||||| || ||||| | ||| | | |||||| || | ||| |
Sbjct 89818 TGGTCGGCGACGTATTCAATGTAGTCGCTCATCATACCGGCGTTCATACCAACGAGCGCG 89877
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
||||| | || | | ||||||||||| |||| || ||||| |||||||
Sbjct 89878 CACGGA-AGAGAGTCGCACACGAACTCCTTCTCGATCTCAACCGCTTCGGTGACAATCTT 89936
Query 48079 CTTAACGCGGGACT-CTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134
|||| |||| || | || |||||| || |||| ||| || | ||| |
Sbjct 89937 ----ACGCACGACTTCTTCGTCCGGCTTGTTGTTGAGCAT-TTGGTATA-AG-AGGCAAG 89989
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
||||||| | ||||||||| || || || ||||||| ||||||||||| | ||| |
Sbjct 89990 CAAAGTCACGGTGCAAGCCCTCATCGCGAGAGATGAGCTCGTTGGAGAAGGTCAAACCCG 90049
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||| | || | || || |||||| | || | ||| || |||||||||||||| |
Sbjct 90050 GCATAAGACCGCGCTTCTTAAGCCAGTAGATGGAGCAGAACGAACCAGAGAAGAAGATAC 90109
Query 48255 CCTCCACTGC-CGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
||| || ||| ||||||||| || | ||| | || || || | ||| |||
Sbjct 90110 CCT-CAATGCACGCGAACGCCAGCAGACGCTCGGCAAACGAGTCGCTGGAGTC---AATC 90165
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372
|| | ||||||||| ||||||||||| | |||||| || ||||| || || |||||
Sbjct 90166 CACTTCAACGCCCAGTCAGCCTTCTTCTTAACGCATGGGATGGTCTCGATAGCGCGGAA 90224
>seq12
Length=542657
Score = 118 bits (130), Expect = 2e-21
Identities = 320/484 (66%), Gaps = 12/484 (2%)
Strand=Plus/Plus
Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919
|||||| ||||| | || |||| | ||| ||| |||||| | ||| ||||||
Sbjct 197767 CTCAAAAAAGTTAGCTTTACCCTGAAGCGAAATGAGCTCCATCCAATCGAACGGGTTGAC 197826
Query 47920 TGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGAT 47979
| |||| | | | || || | ||| || || | ||||||||| |||||||
Sbjct 197827 GGCGTTAAATAGCTTTGATGCTCCGAGCTGAATGAGTAGTCGGTCCGCGACGAACTCGAT 197886
Query 47980 GTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAG 48039
||| | ||| | | | |||||||| | ||| || || ||| | |
Sbjct 197887 GTAAGTGCTCATCATGTCGGCATTCATGCCAACGAGCGAGCAACTCAGAGCGTCACACAC 197946
Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAA-CG-CGGGACTCTGAG 48097
||||||||||| || | ||| || || || || || || | || || || | |||||
Sbjct 197947 GAACTCCTTCTCAATTTTCACCGCGTCTCCTACGATATGATGAAGCGTCGCCTCGCTGAG 198006
Query 48098 -GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTC 48156
|| || | ||| | || | || |||| ||| || ||||| | ||||||||||||
Sbjct 198007 AGGATTCT---GCAA---CATGCCGTACAGCAAGCAAGCGAAGTCGCAGTGCAAGCCTTC 198060
Query 48157 GTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216
||| |||||||||||| ||||||||||| | ||| |||| | || | || ||| ||
Sbjct 198061 GTCTCGGCTGATGAGCTCGTTGGAGAAGGTTAAACCGCGCATCAATCCTCGCTTTTTCAG 198120
Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276
|||||| || || ||| || ||| ||||||||| || || || |||||| |
Sbjct 198121 CCAGAAGATGGCGCAGAATGACCCACTGAAGAAGATTCCTTCGACGCACGCGAATCCCAC 198180
Query 48277 GAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTT 48336
||||| || |||| |||| | | |||||| ||||||||||||||| ||
Sbjct 198181 CAGCCTTTCGGCGAAGCTCGCGTCGCTACC---GATCCAATGAAGCGCCCAGTCTGCTTT 198237
Query 48337 CTTC 48340
| ||
Sbjct 198238 CATC 198241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532567116800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |