Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8 127 4e-24 seq12 118 2e-21 >seq8 Length=717457 Score = 127 bits (140), Expect = 4e-24 Identities = 359/539 (67%), Gaps = 18/539 (3%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || || | ||||| |||||||| ||||| || | | ||||||| ||| Sbjct 89698 TGGTATTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCTTGGAGCGAGATGAGTTCC 89757 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || || || ||||| | ||||| ||| || | || || | | || | Sbjct 89758 ATCCAGTCAAACGGGTTCGCCGTGTTGTACTCCTTGGGCATACCAAGGGAGGTGAACAAG 89817 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA- 48018 || || |||||||| || ||||| | ||| | | |||||| || | ||| | Sbjct 89818 TGGTCGGCGACGTATTCAATGTAGTCGCTCATCATACCGGCGTTCATACCAACGAGCGCG 89877 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||| | || | | ||||||||||| |||| || ||||| ||||||| Sbjct 89878 CACGGA-AGAGAGTCGCACACGAACTCCTTCTCGATCTCAACCGCTTCGGTGACAATCTT 89936 Query 48079 CTTAACGCGGGACT-CTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 |||| |||| || | || |||||| || |||| ||| || | ||| | Sbjct 89937 ----ACGCACGACTTCTTCGTCCGGCTTGTTGTTGAGCAT-TTGGTATA-AG-AGGCAAG 89989 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||||||||| || || || ||||||| ||||||||||| | ||| | Sbjct 89990 CAAAGTCACGGTGCAAGCCCTCATCGCGAGAGATGAGCTCGTTGGAGAAGGTCAAACCCG 90049 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || || |||||| | || | ||| || |||||||||||||| | Sbjct 90050 GCATAAGACCGCGCTTCTTAAGCCAGTAGATGGAGCAGAACGAACCAGAGAAGAAGATAC 90109 Query 48255 CCTCCACTGC-CGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||| || ||| ||||||||| || | ||| | || || || | ||| ||| Sbjct 90110 CCT-CAATGCACGCGAACGCCAGCAGACGCTCGGCAAACGAGTCGCTGGAGTC---AATC 90165 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 || | ||||||||| ||||||||||| | |||||| || ||||| || || ||||| Sbjct 90166 CACTTCAACGCCCAGTCAGCCTTCTTCTTAACGCATGGGATGGTCTCGATAGCGCGGAA 90224 >seq12 Length=542657 Score = 118 bits (130), Expect = 2e-21 Identities = 320/484 (66%), Gaps = 12/484 (2%) Strand=Plus/Plus Query 47860 CTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGG 47919 |||||| ||||| | || |||| | ||| ||| |||||| | ||| |||||| Sbjct 197767 CTCAAAAAAGTTAGCTTTACCCTGAAGCGAAATGAGCTCCATCCAATCGAACGGGTTGAC 197826 Query 47920 TGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGAT 47979 | |||| | | | || || | ||| || || | ||||||||| ||||||| Sbjct 197827 GGCGTTAAATAGCTTTGATGCTCCGAGCTGAATGAGTAGTCGGTCCGCGACGAACTCGAT 197886 Query 47980 GTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAG 48039 ||| | ||| | | | |||||||| | ||| || || ||| | | Sbjct 197887 GTAAGTGCTCATCATGTCGGCATTCATGCCAACGAGCGAGCAACTCAGAGCGTCACACAC 197946 Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAA-CG-CGGGACTCTGAG 48097 ||||||||||| || | ||| || || || || || || | || || || | ||||| Sbjct 197947 GAACTCCTTCTCAATTTTCACCGCGTCTCCTACGATATGATGAAGCGTCGCCTCGCTGAG 198006 Query 48098 -GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTC 48156 || || | ||| | || | || |||| ||| || ||||| | |||||||||||| Sbjct 198007 AGGATTCT---GCAA---CATGCCGTACAGCAAGCAAGCGAAGTCGCAGTGCAAGCCTTC 198060 Query 48157 GTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216 ||| |||||||||||| ||||||||||| | ||| |||| | || | || ||| || Sbjct 198061 GTCTCGGCTGATGAGCTCGTTGGAGAAGGTTAAACCGCGCATCAATCCTCGCTTTTTCAG 198120 Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276 |||||| || || ||| || ||| ||||||||| || || || |||||| | Sbjct 198121 CCAGAAGATGGCGCAGAATGACCCACTGAAGAAGATTCCTTCGACGCACGCGAATCCCAC 198180 Query 48277 GAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTT 48336 ||||| || |||| |||| | | |||||| ||||||||||||||| || Sbjct 198181 CAGCCTTTCGGCGAAGCTCGCGTCGCTACC---GATCCAATGAAGCGCCCAGTCTGCTTT 198237 Query 48337 CTTC 48340 | || Sbjct 198238 CATC 198241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532567116800