Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 147 6e-30 seq1 93.3 1e-13 >seq10 Length=591496 Score = 147 bits (162), Expect = 6e-30 Identities = 227/315 (72%), Gaps = 12/315 (4%) Strand=Plus/Minus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 ||| ||||| ||||| | |||||| || || ||||||||| |||||| || || || Sbjct 222430 GTCCTCCATGGCCTTGACGAGACGACGTTGGATGTAACCAGTTTCAGATGTCTTAACCGC 222371 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGT 302688 || ||||| | ||| | ||||||||||| || |||||||| | ||||| || ||| Sbjct 222370 AGTGTCAATCAAACCTTCGCGACCACCCATGGCGTGGAAGAAGAACTCTTGCGGAGTC-A 222312 Query 302689 AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAAC 302745 |||| | || | ||| | || ||||||||||| | ||| || || ||||||| Sbjct 222311 AGCCGCGTAA-GTACGAGTTTTCGACGAAACCACGGGACTCCGGACCGAAATCGTC---T 222256 Query 302746 TTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACG 302805 ||| | ||||| |||| ||| | || ||||||| |||||||| || || || ||| Sbjct 222255 TTGCTGAAGTGCGGCAAGGTACGTCCCTTGAAGCCGTACGGGATACGTTTGCCTTCTACG 222196 Query 302806 TTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCAC-TGCCCTTGGAGCC 302864 || ||||| |||| |||| |||||||| ||||| |||| || ||||| || || Sbjct 222195 TTTTGCTGACCCACACACGCGATCATCTGTGAAAT-GTTAAGGAACGAACCCTTCGATCC 222137 Query 302865 AGCATTTACCATAAT 302879 ||| ||||||| || Sbjct 222136 AGCGGTTACCATCAT 222122 >seq1 Length=1096037 Score = 93.3 bits (102), Expect = 1e-13 Identities = 179/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||||||||| | || || |||| ||||| ||||| || ||| || Sbjct 269687 GCGATCAAACCACACTTCTGGCAGACGTGGATTCTGTACGCATCGGACTGGTCCATCAGA 269628 Query 251464 CGACCCTTGGTGAAGCGAGATG-CACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || |||| ||| |||| | ||||||| || |||||||| || |||||||| || Sbjct 269627 CGTTCCTTCAGGAA-CGAGGCGGCACCGTGACTCATGATACAATCGCGTTCCATTTCTCC 269569 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAACCA 251581 |||||| | |||||| || | | | |||||| || ||||| || | |||| | Sbjct 269568 GAAACGCAAACCACCGTCTCTCGATCGACCCTCCATTGGTTGACGCGTCAAGATTTGT-A 269510 Query 251582 TAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 ||||||| | ||| || ||| || | ||||| ||||| |||||||| ||| Sbjct 269509 CAGGACCGCGGCCGCGAGAGTGAATCTTGTCGTCGACCATGTGCTTCAGACGCTGATAGT 269450 Query 251642 ATGCGGGACCGATGAAGAT 251660 | | |||||||||||||| Sbjct 269449 ACGTAGGACCGATGAAGAT 269431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817222846740