Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq8 176 6e-38
seq1 136 5e-26
seq12 118 1e-20
seq20 91.5 2e-12
>seq8
Length=717457
Score = 176 bits (194), Expect = 6e-38
Identities = 236/325 (73%), Gaps = 14/325 (4%)
Strand=Plus/Plus
Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749
|||||| ||| ||||| |||||| |||||| |||||||||||||| | |||||||||
Sbjct 89691 CGCCTTTTGGTATTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCTTGGAGCGAGAT 89750
Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCAT-CCGAGCGACG 868808
| |||||||| |||||||| | ||| ||||| | | || |||| || || || |
Sbjct 89751 GAGTTCCATCCAGTCAAACGGGTTCGCCGTGTTGTACT-CCTTGGGCATACCAAGGGAGG 89809
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
|| || | |||||||||| | || ||||| | || ||| | ||||||||||| || |
Sbjct 89810 TGAACAAGTGGTCGGCGACGTATTCAATGTAGTCGCTCATCATACCGGCGTTCATACCAA 89869
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|||||| ||| || || |||| ||| ||||| ||||||||||| || || ||| ||
Sbjct 89870 CGAGCGCGCACGGAAGAGAGTCGCACACGAACTCCTTCTCGATCTCAACCGCTTCGGTGA 89929
Query 868929 TGATCTGCCTGGGCACG------TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCA 868982
|||| | ||||| ||| || ||||||||| |||||| ||| | |
Sbjct 89930 CAATCT---TACGCACGACTTCTTCGTCC---GGCTTGTTGTTGAGCATTTGGTATAAGA 89983
Query 868983 GGCAGGCAAAGTCGCAGTGCAACCC 869007
|||| |||||||| | |||||| ||
Sbjct 89984 GGCAAGCAAAGTCACGGTGCAAGCC 90008
Score = 134 bits (148), Expect = 2e-25
Identities = 195/274 (71%), Gaps = 6/274 (2%)
Strand=Plus/Plus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| | || || |||||| ||| | |||||| |||| | || ||||| || |||
Sbjct 90001 TGCAAGCCCTCATCGCGAGAGATGAGCTCGTTGGAGAAGGTCAAACCCGGCATAAGACCG 90060
Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293
|||||||| ||||| |||||| |||||| || ||||| ||||| ||||| | |
Sbjct 90061 CGCTTCTTAAGCCAGTAGATGGAGCAGAACGAACCAGAGAAGAAGATACCCTCAATGCAC 90120
Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353
|| || | | || ||||||||||| |||| | || || |||||||||| |
Sbjct 90121 GCGAACGCCAGCAGACGCTCGGCAAA-----CGAGTCGCT-GGAGTCAATCCACTTCAAC 90174
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413
|||||||| ||||| ||| | || | || | || ||||| ||||| || | |||| |
Sbjct 90175 GCCCAGTCAGCCTTCTTCTTAACGCATGGGATGGTCTCGATAGCGCGGAACAAGTGGCTC 90234
Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCA 869447
|| |||||||| |||||||| || ||||||||
Sbjct 90235 TTCTCGGCCGGATCCTTGACGTACTGGTCGATCA 90268
Score = 113 bits (124), Expect = 6e-19
Identities = 151/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCG---TGC 1254399
|| |||| ||||| || | | ||| || || || || || ||||| || || | ||
Sbjct 337739 GCTTGGCGAGTTCACCCGGGAGGATGAGTCGGACAGCCGTTTGGATTTCACGGGAGGTGA 337680
Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
|| ||| || |||||| | |||| || | |||| ||||| |||| ||||
Sbjct 337679 CGGTCGGCTT---CTTGTTGTATCGCGCGAGCTTGGCGGCTTCGGTCGCGATCTTCTCGA 337623
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519
|||||||||| ||||||||||||| ||||| | |||| ||||||||| ||| |
Sbjct 337622 AGATGTCGTTGATGAACGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGGTGTCCG 337563
Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||||||| |||||||| ||||||||||||
Sbjct 337562 GGTGCACTTGCTTGAGGACCTTGTAGATG 337534
>seq1
Length=1096037
Score = 136 bits (150), Expect = 5e-26
Identities = 188/263 (71%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
||||| |||||||| ||||||||||| || || || ||||| || | || |||||| |||
Sbjct 14248 TGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCATCGGAATGATGCCGTTCGAC 14189
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
||||||||||| | ||| | || | || || | | ||| || || |||
Sbjct 14188 GTTCCGTTGGTGCCTCGAATGTAAGAGCTCGTAGCTCGGATATCGTGGATGGACAAACCG 14129
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || ||||| || || || || |||||||| || ||||||||||| |||||||||
Sbjct 14128 ATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCAGCGTGTCGTAAATGCCCTCG 14069
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| || || |||||||| | | |||||||| || ||||| ||| || ||
Sbjct 14068 ATGGAATCTTCCTTCATGCAAATCAAGAAGCACGAAGAAAGCTGCGGACGCGGGGTACCA 14009
Query 1630306 GCGTTGAAGAGCGTGGGCGTCGC 1630328
|||||||| | ||| |||| |||
Sbjct 14008 GCGTTGAACAACGTCGGCGACGC 13986
Score = 118 bits (130), Expect = 1e-20
Identities = 118/153 (77%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507
|||||| | ||| ||||||||| |||| || || |||||||| || ||||||||
Sbjct 14402 CATAAACAAGTCGTTCGTCCACAGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTCCTT 14343
Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567
||||||||||| | ||| |||||||| | ||||| |||||||||||||| |||||
Sbjct 14342 ACCGTGGTTCTTACGCAAGTCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTA 14283
Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
| ||| || || ||||||||||| || || ||
Sbjct 14282 GATGGCGAACGCTCCCTTGCGCTTACCACCACC 14250
>seq12
Length=542657
Score = 118 bits (130), Expect = 1e-20
Identities = 139/187 (74%), Gaps = 6/187 (3%)
Strand=Plus/Minus
Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGA 1254421
||| || || ||||| || ||||||||||| ||| | ||| || |||||| |
Sbjct 159765 GATGAGTCGGACGGCCGTTTGGATCTCGCGGGACGTCACCGTCGGCTT---CTTGTTGTA 159709
Query 1254422 GTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1254481
|||| || | |||||||||| |||| |||| |||||||||| ||||||||
Sbjct 159708 TCGCGCGAGCTTGGCGGCCTCGGTCGCGATCTTCTCGAAGATGTCGTTGATGAACGAGTT 159649
Query 1254482 CATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1254541
||||| ||||| | |||| ||||||||| ||| |||||||| |||||||| |||||
Sbjct 159648 CATGATGGACATGGCCTTGGAGGAGATGCCGGTGTCTGGGTGCACTTGCTTGAGGACCTT 159589
Query 1254542 GTAGATG 1254548
|||||||
Sbjct 159588 GTAGATG 159582
Score = 107 bits (118), Expect = 2e-17
Identities = 314/475 (66%), Gaps = 14/475 (3%)
Strand=Plus/Minus
Query 1573776 CTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCAC 1573835
||||||||| |||| ||||| ||||| | | |||||| ||||| ||||| ||||| ||
Sbjct 416769 CTCCCGTGGCTCGAGAAGTACCGCCCCAAGACGCTCGATGACATCGTCGGGAACGACGAC 416710
Query 1573836 GCCGTCGCCTATCTCA---GAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTG 1573892
|| || | ||| | | || ||| ||| |||| |||||| || ||| || |
Sbjct 416709 GCAGTGG---ATCGAATGCGCTCGATGGTTGCGTCCGGCTTCATGCCAAATCTCATGTTT 416653
Query 1573893 GCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGG-CGCGTGTCCTCTT 1573951
||||| ||||| || ||||| | |||| |||||| |||||| |||||
Sbjct 416652 TGCGGTCCACCCGGGTGCGGAAAGACGTCCGCGATCG-GTGTCTTATCGCGTGCGCTCTT 416594
Query 1573952 GGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGA 1574011
|| | | | || || |||||||| | ||||| ||||| ||||| || ||||
Sbjct 416593 AGGGGATAAGTACAAGGACGCGGTGCTCGAGATGAACGCCTCGGATGAGCGTGGGATCGA 416534
Query 1574012 CGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGAC 1574070
||| ||| | || | || ||| ||| |||| | | ||| |||||||| ||||
Sbjct 416533 CGTGGTGAGGAATAAGATTAAGATGTTTGCCCAGAAGAAGGT-GACGCTGCCGCCGGGAC 416475
Query 1574071 GCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCC 1574130
| || | | ||| | ||||| || ||| | ||| ||||||| ||||||||
Sbjct 416474 GGACGAAAATCGTGATCTTAGACGAAGCGGACGCGATGACGACGGCGGCACAGCAGGCGT 416415
Query 1574131 TGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGT 1574190
|||| || ||||| | | |||||||| ||| ||||||||||||||||
Sbjct 416414 TGCGACGGACGATGGAGATATTTTCGGCGACGACGCGATTTTGCCTGGCGTGCAACACGA 416355
Query 1574191 CGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTG 1574243
| ||| |||||| | | | |||||| ||||| || |||| || |||
Sbjct 416354 GTGACAAGGTGATCGAGCCGATTC--AGTCGCGGTGCGCGATCGTGCGTTTCGTG 416302
Score = 104 bits (114), Expect = 3e-16
Identities = 200/292 (68%), Gaps = 10/292 (3%)
Strand=Plus/Plus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| | |||||||| || ||||| | |||||| |||| | ||| |||| | ||
Sbjct 198050 TGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTTAAACCGCGCATCAATCCT 198109
Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGG 869291
||||| || ||||| |||||||||||||| || || | ||| ||||| || ||||||
Sbjct 198110 CGCTTTTTCAGCCAGAAGATGGCGCAGAA--TGACCCACTGAAGAAGATTCCTTCGACGC 198167
Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCA 869351
|| || || | |||| ||||| ||| ||| | | || | |||||| | |
Sbjct 198168 ACGCGAATCCCACCAGCCTTTCGGCGAAG--CTCGCGTCGCTAC----CGATCCAATGAA 198221
Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGT 869411
||||||||| || || || ||| | |||||| |||| ||||||||||| | | |
Sbjct 198222 GCGCCCAGTCTGCTTTCATCGCCACAGTCGGCACTGTGTGAATGGCGCGAAACAATTCGG 198281
Query 869412 CCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
|| | ||| ||||||| || ||||| | || ||||| || ||||
Sbjct 198282 ATTTCTTCTTCGGATCCTTGATGTACGTGTCCAAAAGCAGCGAGTACATCTC 198333
Score = 96.9 bits (106), Expect = 4e-14
Identities = 209/310 (67%), Gaps = 2/310 (1%)
Strand=Plus/Plus
Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694
||| ||||||||||| |||| || || ||||| || | | | |||||| | || ||
Sbjct 198337 GTGAATGTTCTCGATCGCGAGTTGAAATCCGTAGAACGATCGCGCCTCTGGAAGCTGCAC 198396
Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754
|| ||||||| || | ||| |||||| || ||||||||||| | |||||||||
Sbjct 198397 GTCGCTCATGAATCGCGAGCACAGATTCTCGAGAACAATGCCGTCGCTCGAGGCGAAAAA 198456
Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGT 869814
|||| ||||| | ||||| ||||| ||| | |||| | ||| |
Sbjct 198457 CGCCAACACGTGAGACACGAAGTGCTTCTCGTTCTCGTTCAGCGTCTGCCAATCCTTATA 198516
Query 869815 GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACAT 869874
|||| | | || |||||||| || ||||| | ||||| ||||| || |||||
Sbjct 198517 GTCGTACGTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCTCCGCCTTCTTATACAT 198576
Query 869875 CTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGCGCA 869933
|||||| || | | | ||| || |||| |||| || |||| || ||||| | ||
Sbjct 198577 CTCCCAAACCCTCGGATGCTTGATCGGAAAGA-GACAGAATCGGTCCGGATTGTCCCTCA 198635
Query 869934 ACAGGGGTTC 869943
|||| || ||
Sbjct 198636 ACAGCGGCTC 198645
Score = 89.7 bits (98), Expect = 6e-12
Identities = 146/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768
||||| |||| |||||||| | || |||| ||||| || | ||||||||| ||||
Sbjct 197759 ACGCGGTGCTCAAAAAAGTTAGCTTTACCCTGAAGCGAAATGAGCTCCATCCAATCGAAC 197818
Query 868769 GGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGA 868826
|||||| ||||| ||| |||| ||||||| ||| || ||||| ||||
Sbjct 197819 GGGTTGACGGCGTTAAATAG--CTTTGATGCTCCGAGCTGAATGAGTAGTCGGTCCGCGA 197876
Query 868827 CAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCG-CCACCGGCAGC 868885
| ||||||||||| || ||| | | |||| |||||||| | ||||| || | |||
Sbjct 197877 CGAACTCGATGTAAGTGCTCATCATGTCGGCATTCATGCCAACGAGCGAGCAAC-TCAGA 197935
Query 868886 GACTCGCTCACAAACTCTTTCTCGAT 868911
| || | ||| ||||| ||||| ||
Sbjct 197936 GCGTCACACACGAACTCCTTCTCAAT 197961
>seq20
Length=165357
Score = 91.5 bits (100), Expect = 2e-12
Identities = 111/146 (76%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAA-GCC 1592211
|| || ||| | || || |||||| | || || || || || ||| | |||| || | |
Sbjct 98626 GTGGACCAGGCGACGCTGTTTGAGATCATTCTGGCGGCGAATTACTTGAACATGAAAGGC 98685
Query 1592212 TCTGCTCGATCTTGG-GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGG 1592270
| ||||||| |||| ||||| | | ||||| |||||||| || || ||| |||| ||||
Sbjct 98686 T-TGCTCGA-CTTGACGTGCATGACGGTGGCGAACATGATGAAAGGGAAGACGCCGGAGG 98743
Query 1592271 AGATCCGCAAGACCTTTAACATCAAG 1592296
|||| || ||||| ||||||||||||
Sbjct 98744 AGATTCGAAAGACGTTTAACATCAAG 98769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107137558706340
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