Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 176 6e-38 seq1 136 5e-26 seq12 118 1e-20 seq20 91.5 2e-12 >seq8 Length=717457 Score = 176 bits (194), Expect = 6e-38 Identities = 236/325 (73%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| ||||| |||||| |||||| |||||||||||||| | ||||||||| Sbjct 89691 CGCCTTTTGGTATTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCTTGGAGCGAGAT 89750 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCAT-CCGAGCGACG 868808 | |||||||| |||||||| | ||| ||||| | | || |||| || || || | Sbjct 89751 GAGTTCCATCCAGTCAAACGGGTTCGCCGTGTTGTACT-CCTTGGGCATACCAAGGGAGG 89809 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || | |||||||||| | || ||||| | || ||| | ||||||||||| || | Sbjct 89810 TGAACAAGTGGTCGGCGACGTATTCAATGTAGTCGCTCATCATACCGGCGTTCATACCAA 89869 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||||| ||| || || |||| ||| ||||| ||||||||||| || || ||| || Sbjct 89870 CGAGCGCGCACGGAAGAGAGTCGCACACGAACTCCTTCTCGATCTCAACCGCTTCGGTGA 89929 Query 868929 TGATCTGCCTGGGCACG------TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCA 868982 |||| | ||||| ||| || ||||||||| |||||| ||| | | Sbjct 89930 CAATCT---TACGCACGACTTCTTCGTCC---GGCTTGTTGTTGAGCATTTGGTATAAGA 89983 Query 868983 GGCAGGCAAAGTCGCAGTGCAACCC 869007 |||| |||||||| | |||||| || Sbjct 89984 GGCAAGCAAAGTCACGGTGCAAGCC 90008 Score = 134 bits (148), Expect = 2e-25 Identities = 195/274 (71%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || || |||||| ||| | |||||| |||| | || ||||| || ||| Sbjct 90001 TGCAAGCCCTCATCGCGAGAGATGAGCTCGTTGGAGAAGGTCAAACCCGGCATAAGACCG 90060 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| ||||| |||||| |||||| || ||||| ||||| ||||| | | Sbjct 90061 CGCTTCTTAAGCCAGTAGATGGAGCAGAACGAACCAGAGAAGAAGATACCCTCAATGCAC 90120 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 || || | | || ||||||||||| |||| | || || |||||||||| | Sbjct 90121 GCGAACGCCAGCAGACGCTCGGCAAA-----CGAGTCGCT-GGAGTCAATCCACTTCAAC 90174 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 |||||||| ||||| ||| | || | || | || ||||| ||||| || | |||| | Sbjct 90175 GCCCAGTCAGCCTTCTTCTTAACGCATGGGATGGTCTCGATAGCGCGGAACAAGTGGCTC 90234 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCA 869447 || |||||||| |||||||| || |||||||| Sbjct 90235 TTCTCGGCCGGATCCTTGACGTACTGGTCGATCA 90268 Score = 113 bits (124), Expect = 6e-19 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCG---TGC 1254399 || |||| ||||| || | | ||| || || || || || ||||| || || | || Sbjct 337739 GCTTGGCGAGTTCACCCGGGAGGATGAGTCGGACAGCCGTTTGGATTTCACGGGAGGTGA 337680 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || ||| || |||||| | |||| || | |||| ||||| |||| |||| Sbjct 337679 CGGTCGGCTT---CTTGTTGTATCGCGCGAGCTTGGCGGCTTCGGTCGCGATCTTCTCGA 337623 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||| ||||||||||||| ||||| | |||| ||||||||| ||| | Sbjct 337622 AGATGTCGTTGATGAACGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGGTGTCCG 337563 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| |||||||| |||||||||||| Sbjct 337562 GGTGCACTTGCTTGAGGACCTTGTAGATG 337534 >seq1 Length=1096037 Score = 136 bits (150), Expect = 5e-26 Identities = 188/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| |||||||| ||||||||||| || || || ||||| || | || |||||| ||| Sbjct 14248 TGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCATCGGAATGATGCCGTTCGAC 14189 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||||||||| | ||| | || | || || | | ||| || || ||| Sbjct 14188 GTTCCGTTGGTGCCTCGAATGTAAGAGCTCGTAGCTCGGATATCGTGGATGGACAAACCG 14129 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| || || || || |||||||| || ||||||||||| ||||||||| Sbjct 14128 ATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCAGCGTGTCGTAAATGCCCTCG 14069 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || || |||||||| | | |||||||| || ||||| ||| || || Sbjct 14068 ATGGAATCTTCCTTCATGCAAATCAAGAAGCACGAAGAAAGCTGCGGACGCGGGGTACCA 14009 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGC 1630328 |||||||| | ||| |||| ||| Sbjct 14008 GCGTTGAACAACGTCGGCGACGC 13986 Score = 118 bits (130), Expect = 1e-20 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 |||||| | ||| ||||||||| |||| || || |||||||| || |||||||| Sbjct 14402 CATAAACAAGTCGTTCGTCCACAGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTCCTT 14343 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||||||||||| | ||| |||||||| | ||||| |||||||||||||| ||||| Sbjct 14342 ACCGTGGTTCTTACGCAAGTCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTA 14283 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||| || || ||||||||||| || || || Sbjct 14282 GATGGCGAACGCTCCCTTGCGCTTACCACCACC 14250 >seq12 Length=542657 Score = 118 bits (130), Expect = 1e-20 Identities = 139/187 (74%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGA 1254421 ||| || || ||||| || ||||||||||| ||| | ||| || |||||| | Sbjct 159765 GATGAGTCGGACGGCCGTTTGGATCTCGCGGGACGTCACCGTCGGCTT---CTTGTTGTA 159709 Query 1254422 GTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1254481 |||| || | |||||||||| |||| |||| |||||||||| |||||||| Sbjct 159708 TCGCGCGAGCTTGGCGGCCTCGGTCGCGATCTTCTCGAAGATGTCGTTGATGAACGAGTT 159649 Query 1254482 CATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1254541 ||||| ||||| | |||| ||||||||| ||| |||||||| |||||||| ||||| Sbjct 159648 CATGATGGACATGGCCTTGGAGGAGATGCCGGTGTCTGGGTGCACTTGCTTGAGGACCTT 159589 Query 1254542 GTAGATG 1254548 ||||||| Sbjct 159588 GTAGATG 159582 Score = 107 bits (118), Expect = 2e-17 Identities = 314/475 (66%), Gaps = 14/475 (3%) Strand=Plus/Minus Query 1573776 CTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCAC 1573835 ||||||||| |||| ||||| ||||| | | |||||| ||||| ||||| ||||| || Sbjct 416769 CTCCCGTGGCTCGAGAAGTACCGCCCCAAGACGCTCGATGACATCGTCGGGAACGACGAC 416710 Query 1573836 GCCGTCGCCTATCTCA---GAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTG 1573892 || || | ||| | | || ||| ||| |||| |||||| || ||| || | Sbjct 416709 GCAGTGG---ATCGAATGCGCTCGATGGTTGCGTCCGGCTTCATGCCAAATCTCATGTTT 416653 Query 1573893 GCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGG-CGCGTGTCCTCTT 1573951 ||||| ||||| || ||||| | |||| |||||| |||||| ||||| Sbjct 416652 TGCGGTCCACCCGGGTGCGGAAAGACGTCCGCGATCG-GTGTCTTATCGCGTGCGCTCTT 416594 Query 1573952 GGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGA 1574011 || | | | || || |||||||| | ||||| ||||| ||||| || |||| Sbjct 416593 AGGGGATAAGTACAAGGACGCGGTGCTCGAGATGAACGCCTCGGATGAGCGTGGGATCGA 416534 Query 1574012 CGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGAC 1574070 ||| ||| | || | || ||| ||| |||| | | ||| |||||||| |||| Sbjct 416533 CGTGGTGAGGAATAAGATTAAGATGTTTGCCCAGAAGAAGGT-GACGCTGCCGCCGGGAC 416475 Query 1574071 GCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCC 1574130 | || | | ||| | ||||| || ||| | ||| ||||||| |||||||| Sbjct 416474 GGACGAAAATCGTGATCTTAGACGAAGCGGACGCGATGACGACGGCGGCACAGCAGGCGT 416415 Query 1574131 TGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGT 1574190 |||| || ||||| | | |||||||| ||| |||||||||||||||| Sbjct 416414 TGCGACGGACGATGGAGATATTTTCGGCGACGACGCGATTTTGCCTGGCGTGCAACACGA 416355 Query 1574191 CGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTG 1574243 | ||| |||||| | | | |||||| ||||| || |||| || ||| Sbjct 416354 GTGACAAGGTGATCGAGCCGATTC--AGTCGCGGTGCGCGATCGTGCGTTTCGTG 416302 Score = 104 bits (114), Expect = 3e-16 Identities = 200/292 (68%), Gaps = 10/292 (3%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | |||||||| || ||||| | |||||| |||| | ||| |||| | || Sbjct 198050 TGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTTAAACCGCGCATCAATCCT 198109 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGG 869291 ||||| || ||||| |||||||||||||| || || | ||| ||||| || |||||| Sbjct 198110 CGCTTTTTCAGCCAGAAGATGGCGCAGAA--TGACCCACTGAAGAAGATTCCTTCGACGC 198167 Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCA 869351 || || || | |||| ||||| ||| ||| | | || | |||||| | | Sbjct 198168 ACGCGAATCCCACCAGCCTTTCGGCGAAG--CTCGCGTCGCTAC----CGATCCAATGAA 198221 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGT 869411 ||||||||| || || || ||| | |||||| |||| ||||||||||| | | | Sbjct 198222 GCGCCCAGTCTGCTTTCATCGCCACAGTCGGCACTGTGTGAATGGCGCGAAACAATTCGG 198281 Query 869412 CCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || | ||| ||||||| || ||||| | || ||||| || |||| Sbjct 198282 ATTTCTTCTTCGGATCCTTGATGTACGTGTCCAAAAGCAGCGAGTACATCTC 198333 Score = 96.9 bits (106), Expect = 4e-14 Identities = 209/310 (67%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| ||||||||||| |||| || || ||||| || | | | |||||| | || || Sbjct 198337 GTGAATGTTCTCGATCGCGAGTTGAAATCCGTAGAACGATCGCGCCTCTGGAAGCTGCAC 198396 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 || ||||||| || | ||| |||||| || ||||||||||| | ||||||||| Sbjct 198397 GTCGCTCATGAATCGCGAGCACAGATTCTCGAGAACAATGCCGTCGCTCGAGGCGAAAAA 198456 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGT 869814 |||| ||||| | ||||| ||||| ||| | |||| | ||| | Sbjct 198457 CGCCAACACGTGAGACACGAAGTGCTTCTCGTTCTCGTTCAGCGTCTGCCAATCCTTATA 198516 Query 869815 GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACAT 869874 |||| | | || |||||||| || ||||| | ||||| ||||| || ||||| Sbjct 198517 GTCGTACGTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCTCCGCCTTCTTATACAT 198576 Query 869875 CTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGCGCA 869933 |||||| || | | | ||| || |||| |||| || |||| || ||||| | || Sbjct 198577 CTCCCAAACCCTCGGATGCTTGATCGGAAAGA-GACAGAATCGGTCCGGATTGTCCCTCA 198635 Query 869934 ACAGGGGTTC 869943 |||| || || Sbjct 198636 ACAGCGGCTC 198645 Score = 89.7 bits (98), Expect = 6e-12 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 ||||| |||| |||||||| | || |||| ||||| || | ||||||||| |||| Sbjct 197759 ACGCGGTGCTCAAAAAAGTTAGCTTTACCCTGAAGCGAAATGAGCTCCATCCAATCGAAC 197818 Query 868769 GGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGA 868826 |||||| ||||| ||| |||| ||||||| ||| || ||||| |||| Sbjct 197819 GGGTTGACGGCGTTAAATAG--CTTTGATGCTCCGAGCTGAATGAGTAGTCGGTCCGCGA 197876 Query 868827 CAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCG-CCACCGGCAGC 868885 | ||||||||||| || ||| | | |||| |||||||| | ||||| || | ||| Sbjct 197877 CGAACTCGATGTAAGTGCTCATCATGTCGGCATTCATGCCAACGAGCGAGCAAC-TCAGA 197935 Query 868886 GACTCGCTCACAAACTCTTTCTCGAT 868911 | || | ||| ||||| ||||| || Sbjct 197936 GCGTCACACACGAACTCCTTCTCAAT 197961 >seq20 Length=165357 Score = 91.5 bits (100), Expect = 2e-12 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAA-GCC 1592211 || || ||| | || || |||||| | || || || || || ||| | |||| || | | Sbjct 98626 GTGGACCAGGCGACGCTGTTTGAGATCATTCTGGCGGCGAATTACTTGAACATGAAAGGC 98685 Query 1592212 TCTGCTCGATCTTGG-GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGG 1592270 | ||||||| |||| ||||| | | ||||| |||||||| || || ||| |||| |||| Sbjct 98686 T-TGCTCGA-CTTGACGTGCATGACGGTGGCGAACATGATGAAAGGGAAGACGCCGGAGG 98743 Query 1592271 AGATCCGCAAGACCTTTAACATCAAG 1592296 |||| || ||||| |||||||||||| Sbjct 98744 AGATTCGAAAGACGTTTAACATCAAG 98769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137558706340