Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq12 150 2e-31 seq1 145 7e-30 seq8 109 5e-19 seq7 96.9 3e-15 >seq12 Length=542657 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| || ||||| || |||||||||||||| || || | Sbjct 189346 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189405 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || ||||| Sbjct 189406 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189465 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| || ||||| ||||| | | || | || || ||| Sbjct 189466 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189525 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| | || |||||||| ||| Sbjct 189526 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189573 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| || ||||| || |||||||||||||| || || | Sbjct 189574 ATGCAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCG 189633 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || ||||| Sbjct 189634 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189693 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| || ||||| ||||| | | || | || || ||| Sbjct 189694 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189753 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| | || |||||||| ||| Sbjct 189754 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189801 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| || || || || |||||||||||||| || || | Sbjct 189118 ATGCAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCG 189177 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || ||||| Sbjct 189178 GACACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAG 189237 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| || ||||| ||||| | | || | || || ||| Sbjct 189238 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAAC 189297 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| | || |||||||| ||| Sbjct 189298 ATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCGCGGTGGC 189345 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || || ||||| |||||||||||||| ||||| || ||||| |||||| | Sbjct 188991 AGGGATCCCGCCGGATCAGCAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGATGGTCG 189050 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | || | || || ||||| || ||||| || || || ||||||||| | || ||||| Sbjct 189051 CACTTTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACTTGGTGCTCCGCTTGCG 189110 Query 24925 CGGAGGC 24931 ||| ||| Sbjct 189111 CGGTGGC 189117 >seq1 Length=1096037 Score = 145 bits (160), Expect = 7e-30 Identities = 570/884 (64%), Gaps = 27/884 (3%) Strand=Plus/Minus Query 139081 ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGG-TCGCTGTATTCGACAATTTCGGC 139139 || || || | ||||||||| || ||| || ||| ||| |||| || ||||| || | Sbjct 14731 ATGGAAGCCAAGTTGCACACGGCGGTTTCATCCGGGCTCG-TGTACTCAACAATCTCTGT 14673 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 ||||| || |||||||||| || | |||||||| || || ||||| || || Sbjct 14672 GCACAAGTTGGAGGACTTGATCGTGCCGAGGTTTTGTTGGTTAGACTTGCGGTTGCACGC 14613 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG--AATTTG 139257 ||| || | ||||| || || | || || || ||||| | ||| | ||| || Sbjct 14612 ATCCTTAAAGAGCATGTATGGGTTACCGGTCTCAACTTGGGACTCGAGGATGGCAAACCA 14553 Query 139258 AACAAGTC---CCTAGCTTGTATT-TGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTC 139313 || || ||| | | || || | || | | | || ||| ||||||||||| Sbjct 14552 AAGTTGTTGAGCCTTGATGGTCTTCTTACCC---TTACCCTC--CGCT-TCGTACTTTTC 14499 Query 139314 GTA--GAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGA 139371 || ||||| |||||| ||||| || |||||| | | | |||| || || Sbjct 14498 ATACAGAGTT--TCGAATTCCTCACCCCAGCAGTCAGACAATCCAGGGCACTCGTTCGGG 14441 Query 139372 CACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCAC 139431 ||||| | || |||| |||||||||||| ||||||| |||| |||| || ||||| Sbjct 14440 CACATCAACGTCCATTCGCCGTTCGCCTCGACGCGCTTCATAAACAAGTCGTTCGTCCAC 14381 Query 139432 AAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACC---CATGTTACGTTTCATG 139488 | || | | || ||||||||| | || ||| ||| | ||||| || | Sbjct 14380 AGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTCCTTACCGTGGTTCTTACG---CAAG 14324 Query 139489 TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTC 139548 | ||| | ||||| | ||| |||||||| || || || |||||||| | || || || Sbjct 14323 TCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAACGCTCCCTTG 14264 Query 139549 CGTTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGC 139605 || || |||||||| || |||| || | | | ||||| || |||| |||||| Sbjct 14263 CGCTTACCACCACCTTGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCATCGGA 14204 Query 139606 TCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCA 139665 | ||| ||| ||||||||||||| || ||| | | | |||||||| || Sbjct 14203 ATGATGCCGTTCGACGTTCCGTTGGTGCCTCGAATGTAAGAGCTCGTAGCTCGGATATCG 14144 Query 139666 TGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTC 139725 || | | ||||| || ||| || |||| || || | |||| || | || Sbjct 14143 TGGATGGACAAACCGATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCAGCGTG 14084 Query 139726 TCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGC 139785 ||||| || || ||| || |||| ||| | || ||||| || ||||| ||| Sbjct 14083 TCGTAAATGCCCTCGATGGAATCTTCCTTCATGCAAATCAAGAAGCACGAAGAAAGCTGC 14024 Query 139786 GGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGAC 139845 || | || || || |||| || || ||||||||| | | | ||| | Sbjct 14023 GGACGCGGGGTACCAGCGTTGAACAACGTCGGCGACGCGTGCGTCATCCATCGTTCGCTC 13964 Query 139846 ATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACT 139905 | || | |||||| || || || | | || || | |||||| |||| ||||| Sbjct 13963 AGCATGTGGTACGTATCAATCGCCTTTTCGATGTCGGTCTTGTGGATGCCGATGGAGACA 13904 Query 139906 CGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAT 139949 ||||| |||| |||||| || ||| | ||| ||| ||||| Sbjct 13903 CGCATAAGCAAATGTTGCGGACGCTCGACGACCTTGCCGTCGAT 13860 >seq8 Length=717457 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||| || || || || || || ||||| ||||||||||| || || ||||| Sbjct 310506 AAGATCCAAGATAAGGAGGGCATCCCGCCGGATCAGCAACGTTTGATTTTCGCGGGGAAG 310565 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | || | ||||| ||||| |||||||| || || || ||| Sbjct 310566 CAGCTCGAGGACGGCCGCACGTTGGCGGATTACAACATCCAAAAGGAGTCTACGCTCCAC 310625 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| ||||| || || Sbjct 310626 TTGGTGTTGCGCTTGCGAGGTGG 310648 >seq7 Length=770246 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||| || || || || || || ||||| |||||| ||||||| || || || Sbjct 134505 AAGATCCAAGATAAGGAGGGGATCCCGCCGGATCAGCAACGTCTGATCTTCGCGGGTAAG 134564 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || ||||| | | | | || || ||||| |||||||| || || || ||| Sbjct 134565 CAACTCGAGGACGGCCGCACGCTCGCCGACTACAACATCCAAAAGGAGTCCACGCTCCAC 134624 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||||||||| |||||||| || || Sbjct 134625 TTGGTGTTGCGCTTGCGCGGGGGTGG 134650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897487525600