Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 158 2e-32 seq1 156 7e-32 seq12 149 1e-29 seq20 87.8 3e-11 >seq8 Length=717457 Score = 158 bits (174), Expect = 2e-32 Identities = 182/244 (75%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||| || || |||||||||||| |||| ||||| || | | Sbjct 337778 TGAACTTGGTGACAGCCTTGGTGCCTTCAGAGACGGCGTGCTTGGCGAGTTCACCCGGGA 337719 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG---TGCCGATCGTGTTGCGCTTGTTAG 1485586 ||| || || || || || ||||| || |||| || || ||| || |||||| Sbjct 337718 GGATGAGTCGGACAGCCGTTTGGATTTCACGGGAGGTGACGGTCGGCTT---CTTGTTGT 337662 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||||| || | |||| ||||| |||| |||| |||||||||| ||||||| Sbjct 337661 ATCGCGCGAGCTTGGCGGCTTCGGTCGCGATCTTCTCGAAGATGTCGTTGATGAACGAGT 337602 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| | ||| ||||||||| ||| |||||||| |||||||| |||| Sbjct 337601 TCATGATGGACATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGCACTTGCTTGAGGACCT 337542 Query 1485707 TGTA 1485710 |||| Sbjct 337541 TGTA 337538 Score = 156 bits (172), Expect = 7e-32 Identities = 233/324 (72%), Gaps = 10/324 (3%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || |||||||| || ||||| |||||| |||||| |||||||||||||| | |||| Sbjct 89686 ACACCCGCCTTTTGGTATTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCTTGGAGC 89745 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAG 794011 ||||| | |||||||| |||||||| ||||| ||| | ||| ||| || || Sbjct 89746 GAGATGAGTTCCATCCAGTCAAACGGGTTCGCCGTGTTGTACTCCTTGG-GCATACCAAG 89804 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 || | | || | ||||||||||| |||||||||| | || ||| | |||||||||| Sbjct 89805 GGAGGTGAACAAGTGGTCGGCGACGTATTCAATGTAGTCGCTCATCATACCGGCGTTCAT 89864 Query 794072 GCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 || | |||||| ||| || || || |||| || ||||| ||||||||||| || || | Sbjct 89865 ACCAACGAGCGCGCAC-GGAAGAGAGTCGCACACGAACTCCTTCTCGATCTCAACCGCTT 89923 Query 794131 CGATGATGATCTGCCTGGGCACG---TCGGACGACGGCTTGTCGACGAGCATCGTGTAGA 794187 || ||| |||| | ||||| || |||||||| | |||||| ||| | Sbjct 89924 CGGTGACAATCT---TACGCACGACTTCTTCGTCCGGCTTGTTGTTGAGCATTTGGTATA 89980 Query 794188 GCAGGCAGGCAAAGTCGCAATGCA 794211 ||||| |||||||| | |||| Sbjct 89981 AGAGGCAAGCAAAGTCACGGTGCA 90004 Score = 120 bits (132), Expect = 5e-21 Identities = 187/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || |||||| ||| | |||||| ||| | || ||||| || ||||||||| Sbjct 90007 CCCTCATCGCGAGAGATGAGCTCGTTGGAGAAGGTCAAACCCGGCATAAGACCGCGCTTC 90066 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| |||||| ||||| || ||||| ||||| ||||| | | || || Sbjct 90067 TTAAGCCAGTAGATGGAGCAGAACGAACCAGAGAAGAAGATACCCTCAATGCACGCGAAC 90126 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTC-CAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || ||||||||||| | ||| | || || |||||||||| |||||| Sbjct 90127 GCCAGCAGACGCTCGGCAAACGAGTCGCTGGA-------GTCAATCCACTTCAACGCCCA 90179 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| ||| | || | || | || ||||| ||||| || | |||| |||||| Sbjct 90180 GTCAGCCTTCTTCTTAACGCATGGGATGGTCTCGATAGCGCGGAACAAGTGGCTCTTCTC 90239 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGAT 794606 | |||| ||||||||||| |||||| Sbjct 90240 GGCCGGATCCTTGACGTACTGGTCGAT 90266 >seq1 Length=1096037 Score = 156 bits (172), Expect = 7e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC 2071871 |||| |||||| | | || ||| |||||| | | | ||||| |||||||| ||| Sbjct 14450 CTCGTTCGGGCACATCAACGTCCATTCGCCGTTCGCCTCGACGCGCTTCATAAACAAGTC 14391 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 | ||||||||||||||| || ||||||||||| || |||||||| ||||||||||| Sbjct 14390 GTTCGTCCACAGGCCGTAGAACAGATCGCGCGCGCGCGCTTCCTCCTTACCGTGGTTCTT 14331 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 || ||| |||||||| | || ||| |||||||||||||| |||||| ||| || || Sbjct 14330 ACGCAAGTCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAACGC 14271 Query 2071992 GCCCTTGCGCTTGCCGCCGCC 2072012 ||||||||||| || || || Sbjct 14270 TCCCTTGCGCTTACCACCACC 14250 Score = 132 bits (146), Expect = 8e-25 Identities = 187/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || ||||| ||||||||||| || || || ||||| || | | |||||| ||| Sbjct 14248 TGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCATCGGAATGATGCCGTTCGAC 14189 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||||||||||| | ||| | || || || || | | ||| || || ||| Sbjct 14188 GTTCCGTTGGTGCCTCGAATGTAAGAGCTCGTAGCTCGGATATCGTGGATGGACAAACCG 14129 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | || || || |||||||| |||||||| ||||| ||||||||| Sbjct 14128 ATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCAGCGTGTCGTAAATGCCCTCG 14069 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || || || |||||||| | || |||||||| || ||||| |||| || || Sbjct 14068 ATGGAATCTTCCTTCATGCAAATCAAGAAGCACGAAGAAAGCTGCGGACGCGGGGTACCA 14009 Query 2073781 GCATTGAAGAGCGTGGGCGTCGC 2073803 || ||||| | ||| |||| ||| Sbjct 14008 GCGTTGAACAACGTCGGCGACGC 13986 >seq12 Length=542657 Score = 149 bits (164), Expect = 1e-29 Identities = 180/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| || || || ||||||||| | || || || || | | Sbjct 159826 TGAACTTGGTCACCGCCTTGGTCCCTTCGGACACGGCGTGCTTCGCGAGCTCACCCGGGA 159767 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG---TGCCGATCGTGTTGCGCTTGTTAG 1485586 ||| || || ||||| || ||||||||||||| | | ||| || |||||| Sbjct 159766 GGATGAGTCGGACGGCCGTTTGGATCTCGCGGGACGTCACCGTCGGCTT---CTTGTTGT 159710 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||||| || | |||||||||| |||| |||| |||||||||| ||||||| Sbjct 159709 ATCGCGCGAGCTTGGCGGCCTCGGTCGCGATCTTCTCGAAGATGTCGTTGATGAACGAGT 159650 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| | ||| ||||||||| ||| |||||||| |||||||| |||| Sbjct 159649 TCATGATGGACATGGCCTTGGAGGAGATGCCGGTGTCTGGGTGCACTTGCTTGAGGACCT 159590 Query 1485707 TGTA 1485710 |||| Sbjct 159589 TGTA 159586 >seq20 Length=165357 Score = 87.8 bits (96), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||| ||||| | || || |||||| | || || || || || ||| | |||| || Sbjct 98624 AGGTGGACCAGGCGACGCTGTTTGAGATCATTCTGGCGGCGAATTACTTGAACATGAAAG 98683 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | | ||||| ||| ||||| ||| ||||| ||| | || || || ||| |||| |||| Sbjct 98684 GCTTGCTCGACTTGACGTGCATGACGGTGGCGAACATGATGAAAGGGAAGACGCCGGAGG 98743 Query 2035732 ACATCCGCAAGACCTTTAACATCAAG 2035757 | || || ||||| |||||||||||| Sbjct 98744 AGATTCGAAAGACGTTTAACATCAAG 98769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244272508780