Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq12 107 1e-18 seq8 98.7 8e-16 seq7 95.1 9e-15 >seq12 Length=542657 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || |||||||| || |||||||| || || || ||||| || || || Sbjct 189344 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189285 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || || || || | ||||| | ||||||||||||||| Sbjct 189284 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189225 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| | || | ||||| || || ||| Sbjct 189224 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189165 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | || || || || || ||||| Sbjct 189164 TCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || |||||||| || |||||||| || || || ||||| || || || Sbjct 189572 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189513 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || || || || | ||||| | ||||||||||||||| Sbjct 189512 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189453 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| | || | ||||| || || ||| Sbjct 189452 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189393 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | || || || || || ||||| Sbjct 189392 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || |||||||| || |||||||| || || || ||||| || || || Sbjct 189800 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189741 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || || || || | ||||| | ||||||||||||||| Sbjct 189740 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189681 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| | || | ||||| || || ||| Sbjct 189680 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189621 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | || || || || || ||||| Sbjct 189620 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || |||||||| || |||||||| || || || ||||| || || || Sbjct 189116 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189057 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| || || || || | ||||| | ||||||||||||||| Sbjct 189056 AAAGTGCGACCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 188997 Query 29680 ATACC 29684 || || Sbjct 188996 ATCCC 188992 >seq8 Length=717457 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| |||| |||||| || ||||| || || ||||| ||||| |||||||| Sbjct 310648 CCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCC 310589 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || ||||| || || || || | ||||| | ||||||||||||||| Sbjct 310588 AACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGG 310529 Query 29680 ATACCCTCTTTGTCTTG 29696 || ||||| || ||||| Sbjct 310528 ATGCCCTCCTTATCTTG 310512 >seq7 Length=770246 Score = 95.1 bits (104), Expect = 9e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| |||| |||||| || |||||||| || ||||| ||||| || || || Sbjct 134647 CCCCCGCGCAAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCG 134588 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || |||||||| || || || | |||| | ||||||||||||||| Sbjct 134587 AGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGG 134528 Query 29680 ATACCCTCTTTGTCTTG 29696 || ||||| || ||||| Sbjct 134527 ATCCCCTCCTTATCTTG 134511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219106102820