Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 179 4e-40 seq12 127 2e-24 seq8 100 3e-16 >seq1 Length=1096037 Score = 179 bits (198), Expect = 4e-40 Identities = 563/866 (65%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 ||||| || || | ||||||||||| || ||||||||| ||||||| || ||||| Sbjct 14734 GCGATGGAAGCCAAGTTGCACACGGCGGTTTCATCCGGGCTCGTGTACTCAACAATCTCT 14675 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||||| ||| | | |||||| ||| | ||| | ||| || ||||| ||||||| Sbjct 14674 GTGCACAAGTTGGAGGACTTGATCGTGCCGAGGTTTTGTTGGTTAGACTTGCGGTTGCAC 14615 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AAC 148997 || ||||| | |||||||| || || || || || || | || | ||| ||| Sbjct 14614 GCATCCTTAAAGAGCATGTATGGGTTACCGGTCTCAACTTGGGACTCGAGGATGGCAAAC 14555 Query 148998 CGATGCAGGTCCTGCGCGCGCACTTGCTG---CTCGTAGC--GACCCTCCTGCTCGTATA 149052 | | || | || || |||| || || || | ||||||| ||||| Sbjct 14554 CAA---AGTTGTTGAGC-----CTTGATGGTCTTCTTACCCTTACCCTCCGCTTCGTACT 14503 Query 149053 AAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCG 149112 |||||| ||||| |||| || |||| || | || ||||||| || || Sbjct 14502 TTTCATACAGAGTTTCGAATTCCTCACCCCAGCAGTCAGACAATCCAGGGCACTCGTTCG 14443 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCC 149172 ||||||| | || ||| |||||| ||| | |||||||||||||||| ||| | || Sbjct 14442 GGCACATCAACGTCCATTCGCCGTTCGCCTCGACGCGCTTCATAAACAAGTCGTTCGTCC 14383 Query 149173 AGAGCGCGTACATGAGGTCGCGCGC-CTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGG 149231 | || |||| | || |||||||| | || || || || ||| |||| | Sbjct 14382 ACAGGCCGTAGAACAGATCGCGCGCGCGCGC-TTCCTCCTTACCGTGGTTCTTACGCAAG 14324 Query 149232 TTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG 149291 | ||| | || ||||| |||||||||||||| | ||| | |||| ||| |||||| Sbjct 14323 TCAAGCCAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAACGCTCCCTTG 14264 Query 149292 CGCTT---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 ||||| || || ||||| |||| ||| || ||| ||| ||||| || | ||| || Sbjct 14263 CGCTTACCACCACCTTGGTCCACGTAGCGAGCCGTGTCGTTGAACACACGCAGCATCGGA 14204 Query 149349 TCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTG 149408 ||||| | | || ||||| || | |||| | || ||||| | | | Sbjct 14203 ATGATGCCGTTCGACGTTCCGTTGGTGCCTCGAATGTAAGAGCTCGTAGCTCGGATATCG 14144 Query 149409 TGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTC 149468 || | | | ||||| || ||| | | ||||| || |||||| || ||||| Sbjct 14143 TGGATGGACAAACCGATACCTCCGGCAGATTTTGAAATACACGCGCACTCCTTCAGCGTG 14084 Query 149469 GAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGC 149528 ||| |||||||||||| || ||||||| | || |||||||| | | ||| Sbjct 14083 TCGTAAATGCCCTCGATGGAATCTTCCTTCATGCAAATCAAGAAGCACGAAGAAAGCTGC 14024 Query 149529 GGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTC 149588 ||| | || || || ||||| || || ||||| || | || | |||| Sbjct 14023 GGACGCGGGGTACCAGCGTTGAACAACGTCGGCGACGCGTGCGTCATCCATCGTTCGCTC 13964 Query 149589 ATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACG 149648 | ||| | ||||| || | | | || ||||| |||||||| |||| ||| Sbjct 13963 AGCATGTGGTACGTATCAATCGCCTTTTCGATGTCGGTCTTGTGGATGCCGATGGAGACA 13904 Query 149649 CGCATCAGCATATGCTGCGGTCGCTC 149674 ||||| |||| ||| ||||| ||||| Sbjct 13903 CGCATAAGCAAATGTTGCGGACGCTC 13878 >seq12 Length=542657 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| ||| ||| ||| ||||||||||||||| || Sbjct 189314 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACC-GTCCTCGAGCTGCTTACC 189256 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||| || || ||||||||||||||||| |||||| ||| Sbjct 189255 GGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTT 189196 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || |||||| |||| || | ||| ||||| || || || Sbjct 189195 GACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTGCCCGTGAGCGT 189136 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 189135 CTTCACGAAGATTTGCATG 189117 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| ||| ||| ||| ||||||||||||||| || Sbjct 189542 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACC-GTCCTCGAGCTGCTTACC 189484 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||| || || ||||||||||||||||| |||||| ||| Sbjct 189483 GGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTT 189424 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || |||||| |||| || | ||| || || || || || Sbjct 189423 GACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGT 189364 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 189363 CTTCACGAAGATTTGCATG 189345 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| ||| ||| ||| ||||||||||||||| || Sbjct 189770 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACC-GTCCTCGAGCTGCTTACC 189712 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||| || || ||||||||||||||||| |||||| ||| Sbjct 189711 GGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTT 189652 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || |||||| |||| || | ||| || || || || || Sbjct 189651 GACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGT 189592 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 189591 CTTCACGAAGATTTGCATG 189573 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/222 (71%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 120364 ACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAAC 120423 ||||| | |||||||||||| | ||| |||| | ||||||| | ||| | |||||| Sbjct 197759 ACGCGGTGCTCAAAAAAGTTAGCTTTACCCTGAAGCGAAATGAGCTCCATCCAATCGAAC 197818 Query 120424 GGGTTGCTCGCGTTAAAGTATTTCGGCTG-GCCCAACTGTACGAGCAGTCGGTCCGCTAC 120482 |||||| |||||||| || | | || || | ||| | ||| ||||||||||| || Sbjct 197819 GGGTTGACGGCGTTAAA-TAGCTTTGATGCTCCGAGCTGAATGAGTAGTCGGTCCGCGAC 197877 Query 120483 AAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCG-GCAACG 120541 ||||| ||||| || ||| | || ||||||| ||||| | || ||||| Sbjct 197878 GAACTCGATGTAAGTGCTCATCATGTCGGCATTCATGC----CAACG--AGCGAGCAACT 197931 Query 120542 CCGA-CGTGAAA----AACTCCTTCTCAATGTCCACCGCCTC 120578 | || ||| | | |||||||||||||| | |||||| || Sbjct 197932 CAGAGCGTCACACACGAACTCCTTCTCAATTTTCACCGCGTC 197973 >seq8 Length=717457 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || |||||||| ||| |||| ||||||||||||||| ||| Sbjct 310618 GTAGACTCCTTTTGGATGTTGTAATCCGCCAACGTGCGGCCGTCCTCGAGCTGCTTCCCC 310559 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | || ||||| || || |||||||| ||||| || |||||| ||| Sbjct 310558 GCGAAAATCAAACGTTGCTGATCCGGCGGGATGCCCTCCTTATCTTGGATCTTCGCCTTC 310499 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | || | ||||| | || |||||| || | ||||| ||| || || |||| Sbjct 310498 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTACCAGTCA 310444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420679144800