Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12 205 1e-46 seq1 154 2e-31 seq8 138 2e-26 >seq12 Length=542657 Score = 205 bits (226), Expect = 1e-46 Identities = 416/603 (69%), Gaps = 21/603 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||| || | || || ||| |||| || |||| | || || ||| | | | | Sbjct 198645 GAGCCGCTGTTGAGGGACAATCCGGACCGATTCTGTC-TCTTTCCGATCAAGCATCCGAG 198587 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 | | ||||| ||||| || ||||| ||||| ||||||||| || |||||||| || Sbjct 198586 GGTTTGGGAGATGTAT-AAGAAGGCGGAGGCGAGCTTTTGGACGGCGGAGGAGGTTGATT 198528 Query 1455835 T--CGG-CGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | || || | | | || | ||| | |||||| ||| ||||| || ||| | Sbjct 198527 TGACGTACGACTATAAGG---ATTGGCAGACGCTGAACGAGAACGAGAAGCACTTCGTGT 198471 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| | || ||||| |||| | ||||| ||||| || |||||| ||| | Sbjct 198470 CTCACGTGTTGGCGTTTTT-CGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCG 198412 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || |||| || || || | |||||||| || | ||| ||||| || || |||| Sbjct 198411 CGATTCATGAGCGACGTGCAGCTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCG 198352 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||| ||||| ||| || | |||||||| || | ||||| ||| ||||||| ||| Sbjct 198351 ATCGAGAACATTCACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGATCCG 198292 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 |||| | | | ||||||||||| |||| |||||| | ||| || || || Sbjct 198291 AAGAAGAAATCCGAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGCGATGAAAGCA 198232 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 ||||||||| | | |||||| | || | | ||| ||| ||||| |||| || | Sbjct 198231 GACTGGGCGCTTCATTGGATC----GGTAGCGACGCGA-GCTTCGCCGAAAGGCTGGTGG 198177 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | || || ||||||| || ||||| ||| | || || |||||||||||||| ||||| Sbjct 198176 GATTCGCGTGCGTCGAAGGAATCTTCTTCAGTGGGTCA--TTCTGCGCCATCTTCTGGCT 198119 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACG 1456308 || ||||| || | |||| |||| || ||| |||||| | ||||| || |||| Sbjct 198118 GAAAAAGCGAGGATTGATGCGCGGT-TTAACCTTCTCCAACGAGCTCATCAGCCGAGACG 198060 Query 1456309 AAG 1456311 ||| Sbjct 198059 AAG 198057 Score = 129 bits (142), Expect = 8e-24 Identities = 171/235 (73%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| |||||||| |||||||| |||| |||| ||| |||| || Sbjct 159583 ATCTACAAGGTCCTCAAGCAAGTGCACCCAGACACCGG-----CATC-TCCTCCAAGGCC 159636 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| |||||||||| |||| |||| |||||||||| Sbjct 159637 ATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGAAGATCGCGACCGAGGCCGCC 159696 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 || ||||| | ||||||| || ||| | ||| ||||||||||| || ||| Sbjct 159697 AAGCTCGCGCGATACAACAAG---AAGCCGACGGTGACGTCCCGCGAGATCCAAACGGCC 159753 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| | | || || || || | ||||||||| ||||| || |||| Sbjct 159754 GTCCGACTCATCCTCCCGGGTGAGCTCGCGAAGCACGCCGTGTCCGAAGGGACCA 159808 >seq1 Length=1096037 Score = 154 bits (170), Expect = 2e-31 Identities = 192/263 (73%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 ||| |||| ||| | || || || || || ||||| |||||| ||| |||||||| || Sbjct 13986 GCGTCGCCGACGTTGTTCAACGCTGGTACCCCGCGTCCGCAGCTTTCTTCGTGCTTCTTG 14045 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||| ||||| ||||||||||| || |||||||| ||| |||||||| Sbjct 14046 ATTTGCATGAAGGAAGATTCCATCGAGGGCATTTACGACACGCTGAAGGAGTGCGCGTGT 14105 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || || || | ||||| || |||||||| || ||| | | || || || || | Sbjct 14106 ATTTCAAAATCTGCCGGAGGTATCGGTTTGTCCATCCACGATATCCGAGCTACGAGCTCT 14165 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | ||||||||||| ||| |||||| | | || ||||| || || || ||| Sbjct 14166 TACATTCGAGGCACCAACGGAACGTCGAACGGCATCATTCCGATGCTGCGTGTGTTCAAC 14225 Query 260159 GACACGGCGCGCTACGTCGACCA 260181 |||||||| |||||||| ||||| Sbjct 14226 GACACGGCTCGCTACGTGGACCA 14248 Score = 127 bits (140), Expect = 3e-23 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || || || ||||||||||| || || ||| |||||| || ||||||||||| ||| || Sbjct 14250 GGTGGTGGTAAGCGCAAGGGAGCGTTCGCCATCTACCTCGAGCCGTGGCACGCAGACATC 14309 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | ||||||| ||| | ||||||||||| || |||| ||| || |||||||| Sbjct 14310 TTTGACTGGCTTGACTTGCGTAAGAACCACGGTAA-GGAG-----GAAGCGCGCGCGCGC 14363 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 ||||| || ||||||||||||||| |||| |||||||| ||| | | | | | || Sbjct 14364 GATCTGTTCTACGGCCTGTGGACGAACGACTTGTTTATGAAGCGCGTCGAGGCGAACGGC 14423 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAG 261994 || ||| || | | |||||| |||| Sbjct 14424 GAATGGACGTTGATGTGCCCGAACGAG 14450 >seq8 Length=717457 Score = 138 bits (152), Expect = 2e-26 Identities = 233/329 (71%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGAC 1456506 || |||||| |||||||||| || || | ||| |||||| |||||||||| ||| Sbjct 90008 GGCTTGCACCGTGACTTTGCTTGCCTCTTATACCAAATGCTCAACAACAAGCCGGACGAA 89949 Query 1456507 CGA--CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGC 1456564 | ||||| ||| || || ||| || || ||||||||||| ||||| || || Sbjct 89948 GAAGTCGTGCGTAAG---ATTGTCACCGAAGCGGTTGAGATCGAGAAGGAGTTCGTGTGC 89892 Query 1456565 GAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624 || || || ||| |||||| | || ||||||||| | ||| || | |||||||| Sbjct 89891 GACTCTCTTCCGTGCGCGCTCGTTGGTATGAACGCCGGTA-TGATGAGCGACTACATTGA 89833 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 || |||||||||| | || || | | || || | | ||| | ||| ||||| Sbjct 89832 ATAC-GTCGCCGACCACTTGTTCACCTCCCTTGG-TATGCCCAAGGAGTACAACACGGCG 89775 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 |||||||| |||||||| | ||||||||| | |||||||||||||| |||||| Sbjct 89774 AACCCGTTTGACTGGATGGAACTCATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAG 89715 Query 1456745 CGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 ||||| ||||| ||| ||||| || || Sbjct 89714 CGCGTCGGCGAATACCAAAAGGCGGGTGT 89686 Score = 138 bits (152), Expect = 2e-26 Identities = 192/265 (72%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 1456046 TGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACA 1456105 |||||||| ||||||||||| |||| ||||||| |||| | || ||||| ||||| | Sbjct 90268 TGATCGACCAGTACGTCAAGGATCCGGCCGAGAAGAGCCACTTGTTCCGCGCTATCGAGA 90209 Query 1456106 CGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCC 1456165 | | || | || | ||| ||||| ||||||||| |||||||||| || || | | Sbjct 90208 CCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGTGGATTGAC-TCCAGCGAC 90150 Query 1456166 TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGG 1456224 ||| ||||||||||| || | | || || || | ||||| ||||| ||||| || Sbjct 90149 TCG----TTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTATCTTCTTCTCTGG 90094 Query 1456225 CAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTA 1456284 |||||| |||||| ||||| ||||||||||| || ||||| ||| || ||| Sbjct 90093 TTCGTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCGGGT-TTGACCTTCT 90035 Query 1456285 GCAACGAATTTATCAGTCGCGACGA 1456309 |||||| | ||| |||||| || Sbjct 90034 CCAACGAGCTCATCTCTCGCGATGA 90010 Score = 129 bits (142), Expect = 8e-24 Identities = 171/235 (73%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| |||||||| |||||||| |||| |||| ||| |||| || Sbjct 337535 ATCTACAAGGTCCTCAAGCAAGTGCACCCGGACACCGG-----CATC-TCCTCCAAGGCC 337588 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| |||||||||| |||| |||| ||||| |||| Sbjct 337589 ATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGAAGATCGCGACCGAAGCCGCC 337648 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCA---CGCGCGAGATCCAGACCGCC 725087 || ||||| | ||||||| || ||| || || | || || ||||| || || Sbjct 337649 AAGCTCGCGCGATACAACAAG---AAGCCGACCGTCACCTCCCGTGAAATCCAAACGGCT 337705 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| | | || ||||| |||| |||||||||||| || ||||||| Sbjct 337706 GTCCGACTCATCCTCCCGGGTGAACTCGCCAAGCACGCCGTCTCTGAAGGCACCA 337760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809270963240