Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq12 205 1e-46
seq1 154 2e-31
seq8 138 2e-26
>seq12
Length=542657
Score = 205 bits (226), Expect = 1e-46
Identities = 416/603 (69%), Gaps = 21/603 (3%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCG 1455774
||||||||| || | || || ||| |||| || |||| | || || ||| | | | |
Sbjct 198645 GAGCCGCTGTTGAGGGACAATCCGGACCGATTCTGTC-TCTTTCCGATCAAGCATCCGAG 198587
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
| | ||||| ||||| || ||||| ||||| ||||||||| || |||||||| ||
Sbjct 198586 GGTTTGGGAGATGTAT-AAGAAGGCGGAGGCGAGCTTTTGGACGGCGGAGGAGGTTGATT 198528
Query 1455835 T--CGG-CGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891
| || || | | | || | ||| | |||||| ||| ||||| || ||| |
Sbjct 198527 TGACGTACGACTATAAGG---ATTGGCAGACGCTGAACGAGAACGAGAAGCACTTCGTGT 198471
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||||| | || ||||| |||| | ||||| ||||| || |||||| ||| |
Sbjct 198470 CTCACGTGTTGGCGTTTTT-CGCCTCGAGCGACGGCATTGTTCTCGAGAATCTGTGCTCG 198412
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
|| || |||| || || || | |||||||| || | ||| ||||| || || ||||
Sbjct 198411 CGATTCATGAGCGACGTGCAGCTTCCAGAGGCGCGATCGTTCTACGGATTTCAACTCGCG 198352
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
||||| ||||| ||| || | |||||||| || | ||||| ||| ||||||| |||
Sbjct 198351 ATCGAGAACATTCACAGCGAGATGTACTCGCTGCTTTTGGACACGTACATCAAGGATCCG 198292
Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131
|||| | | | ||||||||||| |||| |||||| | ||| || || ||
Sbjct 198291 AAGAAGAAATCCGAATTGTTTCGCGCCATTCACACAGTGCCGACTGTGGCGATGAAAGCA 198232
Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191
||||||||| | | |||||| | || | | ||| ||| ||||| |||| || |
Sbjct 198231 GACTGGGCGCTTCATTGGATC----GGTAGCGACGCGA-GCTTCGCCGAAAGGCTGGTGG 198177
Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248
| || || ||||||| || ||||| ||| | || || |||||||||||||| |||||
Sbjct 198176 GATTCGCGTGCGTCGAAGGAATCTTCTTCAGTGGGTCA--TTCTGCGCCATCTTCTGGCT 198119
Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACG 1456308
|| ||||| || | |||| |||| || ||| |||||| | ||||| || ||||
Sbjct 198118 GAAAAAGCGAGGATTGATGCGCGGT-TTAACCTTCTCCAACGAGCTCATCAGCCGAGACG 198060
Query 1456309 AAG 1456311
|||
Sbjct 198059 AAG 198057
Score = 129 bits (142), Expect = 8e-24
Identities = 171/235 (73%), Gaps = 12/235 (5%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| |||||||| |||||||| |||| |||| ||| |||| ||
Sbjct 159583 ATCTACAAGGTCCTCAAGCAAGTGCACCCAGACACCGG-----CATC-TCCTCCAAGGCC 159636
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||||||||| |||||||||| |||| |||| ||||||||||
Sbjct 159637 ATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGAAGATCGCGACCGAGGCCGCC 159696
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087
|| ||||| | ||||||| || ||| | ||| ||||||||||| || |||
Sbjct 159697 AAGCTCGCGCGATACAACAAG---AAGCCGACGGTGACGTCCCGCGAGATCCAAACGGCC 159753
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || || ||| | | || || || || | ||||||||| ||||| || ||||
Sbjct 159754 GTCCGACTCATCCTCCCGGGTGAGCTCGCGAAGCACGCCGTGTCCGAAGGGACCA 159808
>seq1
Length=1096037
Score = 154 bits (170), Expect = 2e-31
Identities = 192/263 (73%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
||| |||| ||| | || || || || || ||||| |||||| ||| |||||||| ||
Sbjct 13986 GCGTCGCCGACGTTGTTCAACGCTGGTACCCCGCGTCCGCAGCTTTCTTCGTGCTTCTTG 14045
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||| ||||| ||||||||||| || |||||||| ||| ||||||||
Sbjct 14046 ATTTGCATGAAGGAAGATTCCATCGAGGGCATTTACGACACGCTGAAGGAGTGCGCGTGT 14105
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
|| || || | ||||| || |||||||| || ||| | | || || || || |
Sbjct 14106 ATTTCAAAATCTGCCGGAGGTATCGGTTTGTCCATCCACGATATCCGAGCTACGAGCTCT 14165
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | ||||||||||| ||| |||||| | | || ||||| || || || |||
Sbjct 14166 TACATTCGAGGCACCAACGGAACGTCGAACGGCATCATTCCGATGCTGCGTGTGTTCAAC 14225
Query 260159 GACACGGCGCGCTACGTCGACCA 260181
|||||||| |||||||| |||||
Sbjct 14226 GACACGGCTCGCTACGTGGACCA 14248
Score = 127 bits (140), Expect = 3e-23
Identities = 153/207 (74%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| || || ||||||||||| || || ||| |||||| || ||||||||||| ||| ||
Sbjct 14250 GGTGGTGGTAAGCGCAAGGGAGCGTTCGCCATCTACCTCGAGCCGTGGCACGCAGACATC 14309
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
| ||||||| ||| | ||||||||||| || |||| ||| || ||||||||
Sbjct 14310 TTTGACTGGCTTGACTTGCGTAAGAACCACGGTAA-GGAG-----GAAGCGCGCGCGCGC 14363
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
||||| || ||||||||||||||| |||| |||||||| ||| | | | | | ||
Sbjct 14364 GATCTGTTCTACGGCCTGTGGACGAACGACTTGTTTATGAAGCGCGTCGAGGCGAACGGC 14423
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAG 261994
|| ||| || | | |||||| ||||
Sbjct 14424 GAATGGACGTTGATGTGCCCGAACGAG 14450
>seq8
Length=717457
Score = 138 bits (152), Expect = 2e-26
Identities = 233/329 (71%), Gaps = 10/329 (3%)
Strand=Plus/Minus
Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGAC 1456506
|| |||||| |||||||||| || || | ||| |||||| |||||||||| |||
Sbjct 90008 GGCTTGCACCGTGACTTTGCTTGCCTCTTATACCAAATGCTCAACAACAAGCCGGACGAA 89949
Query 1456507 CGA--CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGC 1456564
| ||||| ||| || || ||| || || ||||||||||| ||||| || ||
Sbjct 89948 GAAGTCGTGCGTAAG---ATTGTCACCGAAGCGGTTGAGATCGAGAAGGAGTTCGTGTGC 89892
Query 1456565 GAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624
|| || || ||| |||||| | || ||||||||| | ||| || | ||||||||
Sbjct 89891 GACTCTCTTCCGTGCGCGCTCGTTGGTATGAACGCCGGTA-TGATGAGCGACTACATTGA 89833
Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684
|| |||||||||| | || || | | || || | | ||| | ||| |||||
Sbjct 89832 ATAC-GTCGCCGACCACTTGTTCACCTCCCTTGG-TATGCCCAAGGAGTACAACACGGCG 89775
Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744
|||||||| |||||||| | ||||||||| | |||||||||||||| ||||||
Sbjct 89774 AACCCGTTTGACTGGATGGAACTCATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAG 89715
Query 1456745 CGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772
||||| ||||| ||| ||||| || ||
Sbjct 89714 CGCGTCGGCGAATACCAAAAGGCGGGTGT 89686
Score = 138 bits (152), Expect = 2e-26
Identities = 192/265 (72%), Gaps = 7/265 (3%)
Strand=Plus/Minus
Query 1456046 TGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACA 1456105
|||||||| ||||||||||| |||| ||||||| |||| | || ||||| ||||| |
Sbjct 90268 TGATCGACCAGTACGTCAAGGATCCGGCCGAGAAGAGCCACTTGTTCCGCGCTATCGAGA 90209
Query 1456106 CGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCC 1456165
| | || | || | ||| ||||| ||||||||| |||||||||| || || | |
Sbjct 90208 CCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGTGGATTGAC-TCCAGCGAC 90150
Query 1456166 TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGG 1456224
||| ||||||||||| || | | || || || | ||||| ||||| ||||| ||
Sbjct 90149 TCG----TTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTATCTTCTTCTCTGG 90094
Query 1456225 CAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTA 1456284
|||||| |||||| ||||| ||||||||||| || ||||| ||| || |||
Sbjct 90093 TTCGTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCGGGT-TTGACCTTCT 90035
Query 1456285 GCAACGAATTTATCAGTCGCGACGA 1456309
|||||| | ||| |||||| ||
Sbjct 90034 CCAACGAGCTCATCTCTCGCGATGA 90010
Score = 129 bits (142), Expect = 8e-24
Identities = 171/235 (73%), Gaps = 12/235 (5%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
||||||||||| |||||||| |||||||| |||| |||| ||| |||| ||
Sbjct 337535 ATCTACAAGGTCCTCAAGCAAGTGCACCCGGACACCGG-----CATC-TCCTCCAAGGCC 337588
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||||||||| |||||||||| |||| |||| ||||| ||||
Sbjct 337589 ATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGAAGATCGCGACCGAAGCCGCC 337648
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCA---CGCGCGAGATCCAGACCGCC 725087
|| ||||| | ||||||| || ||| || || | || || ||||| || ||
Sbjct 337649 AAGCTCGCGCGATACAACAAG---AAGCCGACCGTCACCTCCCGTGAAATCCAAACGGCT 337705
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || || ||| | | || ||||| |||| |||||||||||| || |||||||
Sbjct 337706 GTCCGACTCATCCTCCCGGGTGAACTCGCCAAGCACGCCGTCTCTGAAGGCACCA 337760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177809270963240
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