Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 seq12 116 3e-21 seq7 113 4e-20 seq3 82.4 7e-11 >seq8 Length=717457 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | ||||||||| || | |||| ||||||||| ||||||||||| ||| Sbjct 310648 CCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCC 310589 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || |||||||| ||||| || ||||| || ||||| |||| || Sbjct 310588 AACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGG 310529 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||| || |||||| ||||| |||| | | ||||| || ||||| Sbjct 310528 ATGCCCTCCTTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 310470 Query 35689 CTCCACCGTGATCGTTTTACCCGTCA 35714 ||||| ||||| || ||||| |||| Sbjct 310469 CTCCAAGGTGATGGTCTTACCAGTCA 310444 >seq12 Length=542657 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | | |||||| || | ||| |||||| || |||||||| |||||| Sbjct 189572 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189513 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || ||||||||||| || || ||||| || ||||| |||| || Sbjct 189512 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189453 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||| |||||| ||| | |||| | | ||||| || ||||| Sbjct 189452 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCAC 189394 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || |||||||| | || ||||| || || ||||| Sbjct 189393 TTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | | |||||| || | ||| |||||| || |||||||| |||||| Sbjct 189800 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189741 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || ||||||||||| || || ||||| || ||||| |||| || Sbjct 189740 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189681 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||| |||||| ||| | |||| | | ||||| || ||||| Sbjct 189680 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCAC 189622 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || |||||||| | || ||||| || || ||||| Sbjct 189621 TTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | | |||||| || | ||| |||||| || |||||||| |||||| Sbjct 189344 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189285 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || ||||||||||| || || ||||| || ||||| |||| || Sbjct 189284 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189225 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||| |||||| ||| | |||| | | ||||| || ||||| Sbjct 189224 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCAC 189166 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || ||||| | || ||||| || || ||||| Sbjct 189165 TTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | | |||||| || | ||| |||||| || |||||||| |||||| Sbjct 189116 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189057 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 || || || | || || ||||||||||| || || ||||| || ||||| |||| Sbjct 189056 AAAGTGCGACCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCG 189002 >seq7 Length=770246 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || || | ||||||||| || | ||| ||||||||| |||||||| ||||| Sbjct 134647 CCCCCGCGCAAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCG 134588 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || ||||||||||| || |||| || ||||| |||| || Sbjct 134587 AGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGG 134528 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||| || |||||| ||||| |||| | | ||||| || ||||| Sbjct 134527 ATCCCCTCCTTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 134469 Query 35689 CTCCACCGTGATCGTTTTACCCGTCA 35714 ||||| ||||| || |||||||||| Sbjct 134468 CTCCAAGGTGATGGTCTTACCCGTCA 134443 >seq3 Length=997348 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 44187 CGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACC-GCGCTCGT 44245 || ||||| ||| ||||||||| |||||||| | || | | | ||| |||||| Sbjct 935014 CGCATGTACTGGGCCAAGAAGATCCTGGAGTGGACCGA-GTCCCCCGAACAAGCGCTCAA 934956 Query 44246 TCATGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGT 44305 ||||||| ||||| |||| ||| | | ||||||||||| || | |||||| || Sbjct 934955 GTGGTCCATCTACCTGAATGACACGTATTCTCTTGACGGTCGCGATCCGAGCGGGTATGT 934896 Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGAC 44339 || || ||||||||||| |||||| |||||| Sbjct 934895 CGGCTGCATGTGGTCCATCGTCGGTGTTCACGAC 934862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793487301600