Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq12 158 1e-33 seq8 127 2e-24 seq7 114 1e-20 >seq12 Length=542657 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| |||||||| ||||| || |||||||||||| | | ||| || ||| || Sbjct 189555 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189496 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| || || || || |||||||| |||||||| ||||| |||||||| || ||||| Sbjct 189495 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189436 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || ||||| ||| | ||||| || || ||||| ||||| |||||||| || Sbjct 189435 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189376 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || | || || ||||| |||||||| Sbjct 189375 ACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| |||||||| ||||| || |||||||||||| | | ||| || ||| || Sbjct 189783 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189724 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| || || || || |||||||| |||||||| ||||| |||||||| || ||||| Sbjct 189723 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189664 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || ||||| ||| | ||||| || || ||||| ||||| |||||||| || Sbjct 189663 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189604 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || | || || ||||| |||||||| Sbjct 189603 ACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| |||||||| ||||| || |||||||||||| | | ||| || ||| || Sbjct 189327 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189268 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| || || || || |||||||| |||||||| ||||| |||||||| || ||||| Sbjct 189267 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189208 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || ||||| ||| | ||||| || || ||||| ||||| |||||||| || Sbjct 189207 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189148 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| |||||||| Sbjct 189147 GCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| |||||||| ||||| || |||||||||||| | | ||| || || || Sbjct 189099 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTC 189040 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 |||||| || || || || |||||||| |||||||| ||||| || ||| Sbjct 189039 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATCCCT 188991 >seq8 Length=717457 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 |||||||| | ||| ||||| || |||||||| |||||||| || ||||||| || | Sbjct 310636 CGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCCAACG-TGCGGCC 310578 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||| |||||||| || || || ||||||||||| |||||||| ||||| ||||| || || Sbjct 310577 GTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGGATGCCCTCCTT 310518 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||| || || || || ||| | ||||| || || ||||| || | || || Sbjct 310517 ATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGAT 310458 Query 134678 GGTTTTACCGGT 134689 ||| ||||| || Sbjct 310457 GGTCTTACCAGT 310446 >seq7 Length=770246 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||||||| | ||| |||||||| |||||||| |||||||||||| | | ||| | | Sbjct 134635 CGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCG 134576 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || ||||| || || || || || |||| ||| |||||||| ||||| || || || || Sbjct 134575 TCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGGATCCCCTCCTTA 134516 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| || || || || ||| | ||||| || || ||||| || | || ||| Sbjct 134515 TCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATG 134456 Query 134679 GTTTTACCGGT 134689 || ||||| || Sbjct 134455 GTCTTACCCGT 134445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398273650400