Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8 203 4e-47 seq13 143 3e-29 seq1 136 5e-27 seq9 93.3 5e-14 seq12 82.4 9e-11 >seq8 Length=717457 Score = 203 bits (224), Expect = 4e-47 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 176500 AAGGAGTACCTGAAGATCGGAGTGAAGAATAGAGGATGTAATGGTATGACATATACAATG 176559 ||||| || |||||||| || |||||| | | || || || || ||||| || || ||| Sbjct 490402 AAGGAATATCTGAAGATTGGGGTGAAGCAGCGGGGGTGCAACGGGATGACGTACACGATG 490343 Query 176560 AACTACGCCGAGGAGGGCGAGAGGAAAAAGTTCGATGAGTTGGTGGAGACCGATGACGGG 176619 || |||||||| | | |||| |||| ||||||||||| | |||||||| || || ||| Sbjct 490342 AATTACGCCGACGCGAGCGAACGGAAGAAGTTCGATGAACTCGTGGAGACGGAGGATGGG 490283 Query 176620 GCTAAGATTATTATAGAACCAAGCGCATTGATGAATATCATAGGAACTAAGATGGATTAC 176679 || |||||||| | || || || |||||| |||||||| || |||||||||| | Sbjct 490282 GCGAAGATTATCGTCGAGCCGTCGGCGCTGATGAGCATCATAGGGACGAAGATGGATTTC 490223 Query 176680 GTGAGCGATCGATTGACTAGTGAATTTATCTTTCAGAATCCAAACGCGAAATCGGAATGC 176739 |||||||| || ||| || ||||| ||||| |||| || |||||||| |||| ||| Sbjct 490222 GTGAGCGACCGGTTGCGAAGCGAATTCATCTTCGAGAACCCGAACGCGAAGGCGGAGTGC 490163 Query 176740 GGGTGCGGTGAGTCCTTTATGGTTTGA 176766 |||||||||||||| || | ||| ||| Sbjct 490162 GGGTGCGGTGAGTCGTTCACGGTGTGA 490136 Score = 161 bits (178), Expect = 1e-34 Identities = 206/282 (73%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || ||| |||| | |||||| || ||||||| || | || || ||| | || Sbjct 90266 ATCGACCAGTACGTCAAGGATCCGGCCGAGAAGAGCCACTTGTTCCGCGCTATCGAGACC 90207 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT 94794 | || || || | ||||| || || ||||| |||||||| |||| | | ||| Sbjct 90206 ATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGTGGATTGACTCCA----GCGA 90151 Query 94795 -TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 || ||||| ||||| || | || || ||||| ||||||||||||||||||||||||| Sbjct 90150 CTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTATCTTCTTCTCTGGTTC 90091 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||||| | || || ||||| |||||||| ||||| ||||| ||| | ||||||||| Sbjct 90090 GTTCTGCTCCATCTACTGGCTTAAGAAGCGCGGTCTTATGCCGGGTTTGACCTTCTCCAA 90031 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| |||||||| || ||||| | |||| || ||||| Sbjct 90030 CGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTTGC 89989 >seq13 Length=549623 Score = 143 bits (158), Expect = 3e-29 Identities = 182/248 (73%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 ||||||||| || | |||||||||||| ||||| | |||| | || | ||||| || Sbjct 19887 ATCCTTACCGCCTTGCAAACGCGTACCAAATTGACCGCTCGGCACGAGCAAGTTGATGTT 19828 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACC 168576 ||| ||||| | | | || | |||||| ||||| || || |||||| || |||| || Sbjct 19827 GTTCGAACCGACGAAATCTTGCGCCAAGTTGACGATGGTCATCGCGAGTGAAGCTTCGCC 19768 Query 168577 GTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCATCTCAT 168635 ||| || ||||| | ||| | |||| | ||||| ||||||||| ||||| || || Sbjct 19767 GTGATGATACGCGGAGTGCTCCGAGACATA-GCCGCTCAACTGCGCGACTTTGATATCCG 19709 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 |||||| || | |||||||| | | | |||||||||||| || ||||||| || | Sbjct 19708 ACTTGAGCTTGCGCTTGAAGCATGAGAAGAGAACCTTGCGTTGTGAGGGCTTGAAGCCGT 19649 Query 168696 CCGCCATG 168703 || ||||| Sbjct 19648 CCACCATG 19641 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 158821 AAGCATAATACCGAAGAAGATTGTTGGGTAATTATCAAAGATATCGTGTATGATCTCACA 158880 ||||| || || || | ||| |||||| || ||| | | | ||| || || ||||| Sbjct 254304 AAGCACAACACTGAGGGCGATCTTTGGGTGATCATCGAGGGCAACGTCTACGACCTCACC 254245 Query 158881 AAGTTTTTGCCAGATCATCCAGGTGGCAAGAAGGCGATCATGCTTTTTGCTGGAAAGGAT 158940 || || |||| |||||||| ||||| ||||| || |||||||| || || || || || Sbjct 254244 AAATTCCTGCCCGATCATCCGGGTGGAAAGAAAGCAATCATGCTCTTCGCGGGTAAAGAC 254185 Query 158941 GCGACGGAAGAGTTTGATATGCTCCATCCACCGAATGTTCTAAAGAAGTATCTCACACCG 159000 || || ||||||||| | ||| | ||||||||||||||||| |||||||| ||| |||| Sbjct 254184 GCTACAGAAGAGTTTAACATGTTACATCCACCGAATGTTCTGAAGAAGTACCTCTCACCT 254125 Query 159001 GA 159002 || Sbjct 254124 GA 254123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 169169 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 169228 |||||||| ||||| ||||| || | ||| || |||||||||||||| ||| || Sbjct 19178 AGACCCTTAATGTGAGAACCATCATGATCTTGGTCTGTCATGATCATGAGCTTACCGTAA 19119 Query 169229 CGAAGC---TCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTG 169285 || | | | || ||| | | ||||| || || || ||||| | || | |||| Sbjct 19118 CGCAACGATTTGGCGCTATCGT---ACTCCTTGCCGTGCTGCAGACCGAGAATTTGCTTG 19062 Query 169286 AGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACA-GAGGCATCGCGAACATTCTT 169344 | | ||||| || ||| | ||| || || | || |||||||| || ||| Sbjct 19061 ATGTTGTTGATTTCGGCGTTGTTTTTGATTTG-GTCATGCGAAGCATCGCGCACGTTCAG 19003 Query 169345 ACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGC 169404 | || |||||||| ||||||||||| || | || | ||||||||||||||||| Sbjct 19002 AAGTTTACCACGAAGCGGGAAGACACCATACTTGTCTCTGCCAACGACGGAGAGACCGCT 18943 Query 169405 GACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || ||||| | ||| || || || || ||||||| || | ||||| Sbjct 18942 CACAGCGAGCGCCTTGGCAGAATCCCCTTCGGTGAGAATCAAAGTACA 18895 >seq1 Length=1096037 Score = 136 bits (150), Expect = 5e-27 Identities = 408/615 (66%), Gaps = 20/615 (3%) Strand=Plus/Minus Query 9368 TCATTAAGGAGATTTGCGAGTTCAGCGCCAGAGAACCCCGTCGTTTGCTTAGCGATACTC 9427 ||||| || | ||| | | ||||| |||||||| || | ||| |||| ||||| | Sbjct 796323 TCATTGAGCAAATTCGACAAGTCAGCACCAGAGAAGCCTGGGGTTCGCTTTGCGATCATT 796264 Query 9428 CTCAACTTGA-CACCTTCAGCCAACTTCTTATCACGCGCGTGAACACCCAAGATCTTCTC 9486 |||| | | | |||| | || ||||| || || || |||||||||| || Sbjct 796263 -TCAAGGTCAACGTCTTCTTCGAAACGCTTATTTTTGGCATGGACTCCCAAGATCTCCTT 796205 Query 9487 GCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAAG 9546 ||| || | | || | | | ||||| | | ||||| |||||||| || ||||| Sbjct 796204 GCGCCCTTCGAGATCCGGAACATCGACTTGCACTTGGCGATCGAAGCGACCCGGGCGAAG 796145 Query 9547 GAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTT 9604 |||||| || || || || |||| |||||||| |||||||| | ||| || |||| Sbjct 796144 GAGCGCCGGGTCGAGAATGTCTGCGCGGTTCGTCGCTGCGATGACGATAATGCCAGTGTT 796085 Query 9605 TCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCA 9664 | || | |||||||||||||| || | || ||||| | || || || || ||||| Sbjct 796084 GCCTT--CGAAACCATCCATCTCGGTAAGGAGCTGGTTCAAGGTCTGCTCACGCTCATCG 796027 Query 9665 TT---CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATG 9721 || || ||||| | ||| ||| | || |||||||| || || || | | Sbjct 796026 TTACCACCTCCAATACCGGTACCAC-GCGAT--CGGCCGACGGCATCGATTTCGTCGACG 795970 Query 9722 AAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGG 9779 || |||||||| || |||||| || |||| ||||| || || || || | Sbjct 795969 AAAACGATGCACGGGGCATTTTCCTTTGC--CTTCTTGAAGAGGTCGCGGACGCGGGATG 795912 Query 9780 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACA 9838 | || ||||| ||||||||||| || || || | | | | || | || || || ||| Sbjct 795911 CACCGACACCGACAAACATCTCGACGAA-TTCGGAACCGGAGATGGAGAAAAACGGAACA 795853 Query 9839 TTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCG 9898 | || || || || || ||| ||||| |||||||| ||||| ||| ||| | Sbjct 795852 CCCGCCTCTCCGGCGATCGCCTTGGCAAGAAGGGTCTTACCGGTACCCGGCGGACCGACC 795793 Query 9899 AGGAGGGCACCTCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAG 9957 | | |||| | | | ||||||||||| || | | | ||| |||||| |||| || Sbjct 795792 A-AAAGGCAGCCCTTCGGAATCTTGGCACCGACTGCGGTGAATCGCTCAGGGCGCTTCAG 795734 Query 9958 AAAATCCACAATTTC 9972 || || || ||||| Sbjct 795733 GAACTCAACGATTTC 795719 >seq9 Length=713054 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/319 (67%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 || || || |||||||| || | || |||||||||||||| || || ||||| || || Sbjct 441714 TCGAACCCGTCCATCTCGGTGAGGAGCTGGTTAATAGTTTGCTCACGCTCATCGTT-GCC 441656 Query 9671 GGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 | || ||| || | || ||| || || |||||||| || ||||| ||||||| || Sbjct 441655 GCCA-CCCATGCCGGAACCGCGCTGACGACCAACGGCATCGATTTCATCGATGAAGATGA 441597 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 |||| || ||| | || ||| || | ||| || || ||| || || |||| Sbjct 441596 TGCACGGAGCCTTTGCCTTGGCTTTTTCGAACAAATCGCGAACGCGCGACGCACCGACAC 441537 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||| | || || || | | |||| || || ||| || ||| | ||||| Sbjct 441536 CGACAAAGAGTTCGACGAACTCGGAAGCGGCGCACGAGAAGAACGGCACACCTGCTTCAC 441477 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | || | || ||||| || |||||||||||||| || || | | |||| || Sbjct 441476 CGGCGACCGCCTTGGCGATGAGCGTCTTACCCGTACCCGGAGGTCCGACCAAGAGGCAAC 441417 Query 9909 CTCGTGGAATCTTGGCGCC 9927 | || ||||||||||| Sbjct 441416 CCTTCGGGATCTTGGCGCC 441398 >seq12 Length=542657 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| ||||| || || || ||||||||| ||| || |||||||| || | ||||| || Sbjct 198175 ATTCGCGTGCGTCGAAGGAATCTTCTTCAGTGGGTCATTCTGCGCCATCTTCTGGCTGAA 198116 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| | |||| ||| | ||||||||||||||| ||| || ||||| || Sbjct 198115 AAAGCGAGGATTGATGCGCGGTTTAACCTTCTCCAACGAGCTCATCAGCCGAGACGAAGG 198056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260654184800