Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2 176 1e-38
seq17 149 2e-30
seq12 100 9e-16
seq10 89.7 2e-12
>seq2
Length=1074072
Score = 176 bits (194), Expect = 1e-38
Identities = 456/688 (66%), Gaps = 13/688 (2%)
Strand=Plus/Plus
Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261
|| || |||||| | || || || ||||| || |||| | || ||| | ||
Sbjct 261585 ATCGGGATCGATCTCGGCACGACGTATTCATGCGTTGGCGCTTATGTAAACGGCAAAGTG 261644
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
||||| || |||||||||||||| ||||| | || ||||| ||||| || || |||||
Sbjct 261645 GAAATCATCGCAAATGATCAAGGAAACAGGATTACACCATCTTACGTGGCGTTCACCGAC 261704
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| ||| | |||| || || || || || || ||||| |||| ||||| | ||
Sbjct 261705 ACCGAGAGATTGATCGGCGACTCCGCCAAGAACCAAGCATCTGCGAATCCCACGCGCACT 261764
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441
|| || || || ||||| || || || | | || | ||||| ||| ||||
Sbjct 261765 GTCTTCGACGCGAAGCGCCTCATCGGACGGAAATTCACCGACAAGGAAGTCCAACGTGAT 261824
Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501
|| || ||||| || | |||| | | ||| | | || || || || |
Sbjct 261825 CTCAAGATGTTTCCATTCAAAATTGT-CGACAAG--GATAGCAAGCCGTGCATCGAAATC 261881
Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTTAGT 349560
||| |||| || ||| || | |||| | | ||||||||||| | |||||| |
Sbjct 261882 GAACTCAAAGATGG-CAAGAAGATTTTTCAAGCTGAAGAAATTTCCGCGATGGTTCTCAC 261940
Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAA-ACAGTAACTGATGCTGTTATTA 349619
|||||||||||||| |||||| ||||| | || | ||| || | || || | |
Sbjct 261941 TAAAATGAAGGAAACTGCTGAGGCATACCTCGGCAAGGACATCAAGA-ACGCCGTGGTGA 261999
Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679
| || || |||||||| ||||||||||||||| || || |||||||| || | ||| |
Sbjct 262000 CGGTTCCCGCCTATTTCAATGATGCCCAGCGTCAAGCCACCAAAGATGCGGGAATCATCG 262059
Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739
| || |||| || |||||| || || || || ||||| || ||||| || || ||
Sbjct 262060 CTGGTCTAAACGTGGCAAGAATTATCAACGAGCCTACTGCCGCGGCAATCGCTTACGGCT 262119
Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799
| || |||| | | || |||||||| || | || ||| | || || || || |
Sbjct 262120 TGGACAAAAAGGG------CGAGAAAAATATCCTCGTCTTCGATCTTGGCGGAGGGACCT 262173
Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
|||| ||||| | || || |||| | || | || ||||| | | || || |
Sbjct 262174 TTGACGTATCCATTCTTACCATTGACAACGGCGTGTTCGAAGTGATCTCGACGAACGGAG 262233
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGA 349887
|||| || | || || |||||||||||
Sbjct 262234 ATACTCACTTGGGCGGCGAAGATTTTGA 262261
>seq17
Length=411047
Score = 149 bits (164), Expect = 2e-30
Identities = 523/802 (65%), Gaps = 31/802 (4%)
Strand=Plus/Plus
Query 349535 GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGT 349594
|| |||||||| || |||||||| ||||| |||||||||| || || || || | ||
Sbjct 346110 GAGGAAATTTCTTCCATGGTTTTGGTTAAGATGAAGGAAACCGCCGAGGCGTACCTCGGC 346169
Query 349595 ---GAAA-CAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
|||| || ||| || || | ||||| || || || || || || |||||||
Sbjct 346170 AAGGAAATCAAGAAC----GCCGTCGTCACTGTCCCGGCGTACTTCAACGACTCCCAGCG 346225
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAA-TGTTCTAAGAATGATTAATG 349709
| || || || ||||| | | ||| || || | || || | | | || || || |
Sbjct 346226 TCAAGCGACCAAGGATGCCGCCGTCATCGCCGGCCTGAACTGCT-TGCGCATCATCAACG 346284
Query 349710 AACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA----AATGAGTGACCAA------ 349759
| || || || || || || || || || | || || || ||| | |||
Sbjct 346285 AGCCGACCGCCGCGGCCATCGCGTACGGTTTGGACAAGCGCAACGAG--AACAACGGCGC 346342
Query 349760 -GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818
|| || || | | ||||| ||| | ||||||||||| || ||||| || || | ||
Sbjct 346343 CGAGAAGAACGTCTTAATTTTCGATCTCGGTGGTGGTACCTTCGATGTGTCTCTCTTGAC 346402
Query 349819 ACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGA 349878
| || || || || || ||||| || || || ||||| || || || | || || ||
Sbjct 346403 CATCGAGGAAGGTATCTTCGAAGTCAAGGCGACGGCTGGCGACACGCACTTGGGCGGCGA 346462
Query 349879 AGATTTTGATAATCGTCTCGTTTC-GCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAA 349936
|||||| || || | | ||| | ||| || | |||| || ||||| ||||| ||
Sbjct 346463 AGATTTCGACAA-CAGATTGTTGCAGCACTTCATCCAAGAGTTCAAGCG-CAAGCACAAG 346520
Query 349937 ATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCT 349996
| || || | ||| || | || | || || || | || ||||| ||||| ||
Sbjct 346521 AAGGACATCACTGGTAACCCGAAGGCTCTCCGCCGTCTTCGCACCGCGTGCGAACGCGCG 346580
Query 349997 AAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGC 350056
||||| |||| || || ||| | ||||||||| | || || || ||||| || |||
Sbjct 346581 AAGCGCACCTTGTCTTCCACTGCGCAAACCTCTGTCGAGATCGACTCTCTCTTCGAGGGC 346640
Query 350057 AAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTT 350116
|| |||| | || || || |||||||| || ||||| | || ||||| ||| ||
Sbjct 346641 GTGGACTTCTACACCTCCATCACCCGTGCTCGCTTCGAAGAGCTCTGCATGGA-CTTGTT 346699
Query 350117 AGAGCAA--CAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATC 350174
|||| ||||| || || || || | || | || ||| ||| |
Sbjct 346700 -CCGCAAGTGCATGGACCCGGTTGAGAAGTGCCTCCGTGACTCCAAGATGGACAAGTCTT 346758
Query 350175 AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTAC 350234
| | ||||| || | ||||||||||| || |||||||| || ||||||||| |
Sbjct 346759 CCGTCCACGAAGTTGTCCTCGTTGGTGGTTCCACGCGTATTCCGAAGGTTCAACAGCTCT 346818
Query 350235 TATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTG 350294
| || || || || || ||||| || | | || || || || |||||||| || |
Sbjct 346819 TGTCCGACTTCTTCAACGGCAAGGAGTTGTGCAAGTCCATCAACCCGGATGAAGCCGTCG 346878
Query 350295 CATATGGTGCTGCTGTTCAGGC 350316
| || ||||| || || || ||
Sbjct 346879 CGTACGGTGCGGCCGTCCAAGC 346900
>seq12
Length=542657
Score = 100 bits (110), Expect = 9e-16
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| ||||| || || | || || | || || || ||||| || || || || |
Sbjct 189352 TTTGCATGCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGT 189293
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | || || || || || || || || || || || ||||| | |||||||||||
Sbjct 189292 AGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGAT 189233
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || ||||| || || || || || || || || || || || | || || |
Sbjct 189232 CCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGG 189173
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || |||| ||||| || || || || || || || || |||||
Sbjct 189172 ACTCCACTTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118
Score = 100 bits (110), Expect = 9e-16
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| ||||| || || | || || | || || || ||||| || || || || |
Sbjct 189580 TTTGCATGCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGT 189521
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | || || || || || || || || || || || ||||| | |||||||||||
Sbjct 189520 AGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGAT 189461
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || ||||| || || || || || || || || || || || | || || |
Sbjct 189460 CCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGG 189401
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || |||| ||||| || || || || || || || || |||||
Sbjct 189400 ACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346
Score = 95.1 bits (104), Expect = 4e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
||||| || || | || || | || || || ||||| || || || || || || |
Sbjct 189800 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189741
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
|| || || || || || || || || || || ||||| | |||||||||||| || ||
Sbjct 189740 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189681
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| ||||| || || || || || || || || || || || | || || | || |||
Sbjct 189680 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189621
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || |||| ||||| || || || || || || || || |||||
Sbjct 189620 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574
>seq10
Length=591496
Score = 89.7 bits (98), Expect = 2e-12
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 235877 TCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGT 235936
|||| | ||||| |||| |||| |||||||||||| ||| ||||| ||||||| |||||
Sbjct 454016 TCGTCCTATATACGGGGTCGTAGCTCAATTGGTAGAGCGCGCGCTTCGCATGCGCGAGGT 454075
Query 235937 ACCGGGATCAAAACCCAGCATCTCCAT 235963
||||||||| ||||| || ||||||
Sbjct 454076 ACCGGGATCGAAACCTGGCGACTCCAT 454102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515254011716060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |