Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 176 1e-38 seq17 149 2e-30 seq12 100 9e-16 seq10 89.7 2e-12 >seq2 Length=1074072 Score = 176 bits (194), Expect = 1e-38 Identities = 456/688 (66%), Gaps = 13/688 (2%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || |||||| | || || || ||||| || |||| | || ||| | || Sbjct 261585 ATCGGGATCGATCTCGGCACGACGTATTCATGCGTTGGCGCTTATGTAAACGGCAAAGTG 261644 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| || |||||||||||||| ||||| | || ||||| ||||| || || ||||| Sbjct 261645 GAAATCATCGCAAATGATCAAGGAAACAGGATTACACCATCTTACGTGGCGTTCACCGAC 261704 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || ||| | |||| || || || || || || ||||| |||| ||||| | || Sbjct 261705 ACCGAGAGATTGATCGGCGACTCCGCCAAGAACCAAGCATCTGCGAATCCCACGCGCACT 261764 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || ||||| || || || | | || | ||||| ||| |||| Sbjct 261765 GTCTTCGACGCGAAGCGCCTCATCGGACGGAAATTCACCGACAAGGAAGTCCAACGTGAT 261824 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 || || ||||| || | |||| | | ||| | | || || || || | Sbjct 261825 CTCAAGATGTTTCCATTCAAAATTGT-CGACAAG--GATAGCAAGCCGTGCATCGAAATC 261881 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTTAGT 349560 ||| |||| || ||| || | |||| | | ||||||||||| | |||||| | Sbjct 261882 GAACTCAAAGATGG-CAAGAAGATTTTTCAAGCTGAAGAAATTTCCGCGATGGTTCTCAC 261940 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAA-ACAGTAACTGATGCTGTTATTA 349619 |||||||||||||| |||||| ||||| | || | ||| || | || || | | Sbjct 261941 TAAAATGAAGGAAACTGCTGAGGCATACCTCGGCAAGGACATCAAGA-ACGCCGTGGTGA 261999 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || || |||||||| ||||||||||||||| || || |||||||| || | ||| | Sbjct 262000 CGGTTCCCGCCTATTTCAATGATGCCCAGCGTCAAGCCACCAAAGATGCGGGAATCATCG 262059 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || |||| || |||||| || || || || ||||| || ||||| || || || Sbjct 262060 CTGGTCTAAACGTGGCAAGAATTATCAACGAGCCTACTGCCGCGGCAATCGCTTACGGCT 262119 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 | || |||| | | || |||||||| || | || ||| | || || || || | Sbjct 262120 TGGACAAAAAGGG------CGAGAAAAATATCCTCGTCTTCGATCTTGGCGGAGGGACCT 262173 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 |||| ||||| | || || |||| | || | || ||||| | | || || | Sbjct 262174 TTGACGTATCCATTCTTACCATTGACAACGGCGTGTTCGAAGTGATCTCGACGAACGGAG 262233 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGA 349887 |||| || | || || ||||||||||| Sbjct 262234 ATACTCACTTGGGCGGCGAAGATTTTGA 262261 >seq17 Length=411047 Score = 149 bits (164), Expect = 2e-30 Identities = 523/802 (65%), Gaps = 31/802 (4%) Strand=Plus/Plus Query 349535 GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGT 349594 || |||||||| || |||||||| ||||| |||||||||| || || || || | || Sbjct 346110 GAGGAAATTTCTTCCATGGTTTTGGTTAAGATGAAGGAAACCGCCGAGGCGTACCTCGGC 346169 Query 349595 ---GAAA-CAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 |||| || ||| || || | ||||| || || || || || || ||||||| Sbjct 346170 AAGGAAATCAAGAAC----GCCGTCGTCACTGTCCCGGCGTACTTCAACGACTCCCAGCG 346225 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAA-TGTTCTAAGAATGATTAATG 349709 | || || || ||||| | | ||| || || | || || | | | || || || | Sbjct 346226 TCAAGCGACCAAGGATGCCGCCGTCATCGCCGGCCTGAACTGCT-TGCGCATCATCAACG 346284 Query 349710 AACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA----AATGAGTGACCAA------ 349759 | || || || || || || || || || | || || || ||| | ||| Sbjct 346285 AGCCGACCGCCGCGGCCATCGCGTACGGTTTGGACAAGCGCAACGAG--AACAACGGCGC 346342 Query 349760 -GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818 || || || | | ||||| ||| | ||||||||||| || ||||| || || | || Sbjct 346343 CGAGAAGAACGTCTTAATTTTCGATCTCGGTGGTGGTACCTTCGATGTGTCTCTCTTGAC 346402 Query 349819 ACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGA 349878 | || || || || || ||||| || || || ||||| || || || | || || || Sbjct 346403 CATCGAGGAAGGTATCTTCGAAGTCAAGGCGACGGCTGGCGACACGCACTTGGGCGGCGA 346462 Query 349879 AGATTTTGATAATCGTCTCGTTTC-GCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAA 349936 |||||| || || | | ||| | ||| || | |||| || ||||| ||||| || Sbjct 346463 AGATTTCGACAA-CAGATTGTTGCAGCACTTCATCCAAGAGTTCAAGCG-CAAGCACAAG 346520 Query 349937 ATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCT 349996 | || || | ||| || | || | || || || | || ||||| ||||| || Sbjct 346521 AAGGACATCACTGGTAACCCGAAGGCTCTCCGCCGTCTTCGCACCGCGTGCGAACGCGCG 346580 Query 349997 AAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGC 350056 ||||| |||| || || ||| | ||||||||| | || || || ||||| || ||| Sbjct 346581 AAGCGCACCTTGTCTTCCACTGCGCAAACCTCTGTCGAGATCGACTCTCTCTTCGAGGGC 346640 Query 350057 AAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTT 350116 || |||| | || || || |||||||| || ||||| | || ||||| ||| || Sbjct 346641 GTGGACTTCTACACCTCCATCACCCGTGCTCGCTTCGAAGAGCTCTGCATGGA-CTTGTT 346699 Query 350117 AGAGCAA--CAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATC 350174 |||| ||||| || || || || | || | || ||| ||| | Sbjct 346700 -CCGCAAGTGCATGGACCCGGTTGAGAAGTGCCTCCGTGACTCCAAGATGGACAAGTCTT 346758 Query 350175 AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTAC 350234 | | ||||| || | ||||||||||| || |||||||| || ||||||||| | Sbjct 346759 CCGTCCACGAAGTTGTCCTCGTTGGTGGTTCCACGCGTATTCCGAAGGTTCAACAGCTCT 346818 Query 350235 TATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTG 350294 | || || || || || ||||| || | | || || || || |||||||| || | Sbjct 346819 TGTCCGACTTCTTCAACGGCAAGGAGTTGTGCAAGTCCATCAACCCGGATGAAGCCGTCG 346878 Query 350295 CATATGGTGCTGCTGTTCAGGC 350316 | || ||||| || || || || Sbjct 346879 CGTACGGTGCGGCCGTCCAAGC 346900 >seq12 Length=542657 Score = 100 bits (110), Expect = 9e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || || | || || | || || || ||||| || || || || | Sbjct 189352 TTTGCATGCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGT 189293 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || || || || || || || || ||||| | ||||||||||| Sbjct 189292 AGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGAT 189233 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| || || || || || || || || || || || | || || | Sbjct 189232 CCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGG 189173 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || |||| ||||| || || || || || || || || ||||| Sbjct 189172 ACTCCACTTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 100 bits (110), Expect = 9e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || || | || || | || || || ||||| || || || || | Sbjct 189580 TTTGCATGCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGT 189521 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || || || || || || || || ||||| | ||||||||||| Sbjct 189520 AGTCGGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGAT 189461 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| || || || || || || || || || || || | || || | Sbjct 189460 CCGGCGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGG 189401 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || |||| ||||| || || || || || || || || ||||| Sbjct 189400 ACTCCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 95.1 bits (104), Expect = 4e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| || || | || || | || || || ||||| || || || || || || | Sbjct 189800 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189741 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || || || || || || || || || ||||| | |||||||||||| || || Sbjct 189740 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189681 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || || || || || || || || || || || | || || | || ||| Sbjct 189680 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189621 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||| ||||| || || || || || || || || ||||| Sbjct 189620 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 >seq10 Length=591496 Score = 89.7 bits (98), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 235877 TCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGT 235936 |||| | ||||| |||| |||| |||||||||||| ||| ||||| ||||||| ||||| Sbjct 454016 TCGTCCTATATACGGGGTCGTAGCTCAATTGGTAGAGCGCGCGCTTCGCATGCGCGAGGT 454075 Query 235937 ACCGGGATCAAAACCCAGCATCTCCAT 235963 ||||||||| ||||| || |||||| Sbjct 454076 ACCGGGATCGAAACCTGGCGACTCCAT 454102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254011716060