Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 seq13 127 2e-24 seq14 118 1e-21 seq12 114 1e-20 seq5 102 9e-17 seq8 89.7 6e-13 >seq1 Length=1096037 Score = 223 bits (246), Expect = 4e-53 Identities = 500/736 (68%), Gaps = 20/736 (3%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| |||||| || | ||||| || | | |||||||| |||| || ||||||| Sbjct 13946 TGATACGTACCACATGCTGAGCGAACGATGGATGACGCACGCGTCGCCGACGTTGTTCAA 14005 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||||||| | || ||| | || |||||| || | |||||||| || || Sbjct 14006 CGCTGGTACCCCGCGTCCGCAGCTTTCTTCGTGCTTCTTGATTTGCATGAAGGAAGATTC 14065 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||| ||||| ||||| |||||||| || || || || | | || || Sbjct 14066 CATCGAGGGCATTTACGACACGCTGAAGGAGTGCGCGTGTATTTCAAAATCTGCCGGAGG 14125 Query 53422 TATCGGTAT--CCACTGCTCGAACGTCCGTGCGAACGGCACAC-CAATCAAGGGGACGAA 53478 ||||||| | ||| | | ||| |||| || | || | || || ||| || || Sbjct 14126 TATCGGTTTGTCCA-TCCACGATA-TCCGAGCTACGAGCTCTTACATTCGAGGC-ACCAA 14182 Query 53479 CGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 ||| ||||| | || ||| | || ||||| || || |||||| ||||||| || ||| Sbjct 14183 CGGAACGTCGA--ACGGCATCATTCCGATGCTGCGTGTGTTCAACGACACGGCTCGCTAC 14240 Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 || |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 14241 GTGGACCAAGGTGGTGGTAAGCGCAAGGGAGCGTTCGCCATCTACCTCGAGCCGTGGCAC 14300 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 || ||||| | || | || || ||||| ||| || ||| | || || |||| Sbjct 14301 GCAGACATCTTTGACTGGCTTGACTTGCGTAAGAACCACGGTAAGGAGGAAGCGCGCGCG 14360 Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 || || ||||| ||| || ||||||| ||| | || ||| | || ||| | | Sbjct 14361 CGCGATCTGTTCTACGGC-CTGTGGACGAACGACTTGTTTATGAAGCGCGTCGAGGCGAA 14419 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTG 53774 || || ||| |||||||||||||||||||||| || | | | || || |||| Sbjct 14420 CGGCGAATGGACGTTGATGTGCCCGAACGAGTGCCCTGGATTGTCTGACTG-CTGGGGTG 14478 Query 53775 AGGAGTTTAACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGG 53831 |||| || ||| | ||||| | ||||| || |||| ||||||| Sbjct 14479 AGGAATT---CGAAACTCTGTATGAAAAGTACGAAGCGGAGGGTAAGGGTAAGAAGACCA 14535 Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891 ||||||| | | | ||| ||| |||||| || ||| || ||||| || | || | Sbjct 14536 TCAAGGCTCAACAACTTTGGTTTGCCATCCTCGAGTCCCAAGTTGAGACCGGTAACCCAT 14595 Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCA 53951 ||||| || |||||| || |||| ||| ||||| | ||| ||||| |||| Sbjct 14596 ACATGCTCTTTAAGGATGCGTGCAACCGCAAGTCTAACCAACAAAACCTCGGCACGATCA 14655 Query 53952 AATCGAGCAACTTATG 53967 | || |||||| || Sbjct 14656 AGTCCTCCAACTTGTG 14671 Score = 147 bits (162), Expect = 2e-30 Identities = 308/454 (68%), Gaps = 4/454 (1%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||||| || || ||||| |||||||| ||| |||| || | Sbjct 15234 GGCGTTCGCAACTCTTTGCTCGTCGCTCCGATGCCGACCGCGTCTACGTCTCAAATTCTT 15293 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| ||||||||||||||| | ||||||||| ||||| | | Sbjct 15294 GGCAACAACGAGTGCTTCGAGCCGTACACGTCGAACATCTACGCTCGCCGCGTGTTGTCC 15353 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 ||||||||| | | | ||| ||||| | | || || || | | |||| Sbjct 15354 GGTGAGTTTACCGTCGTGAACCAGCACTTGTTGTCTGATCTCACTGAGCTTGGCCTGTGG 15413 Query 55658 AACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAGATT 55717 | ||| || | |||| || | | |||| || ||||| || | |||| ||| Sbjct 15414 GATCCGGAGCTGAAGAACGAGCTCATCTCGAACAACGGTTCCGTGCAAGACTTGGACATT 15473 Query 55718 CCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG-TCTGAT 55776 || | ||| | |||||| |||||||||||||| || | | | | ||| | Sbjct 15474 CCGGACAACTTGAAGAACATTTACAAGACGGTGTGGGAGA-TCAAGCAACGTGTTCTTGT 15532 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 ||||||| || ||| | || |||| ||| || ||||| ||||| | ||| | ||| Sbjct 15533 TGACATGGCCGCGGATAGAGGCGCGTTCATTGATCAGTCTCAGTCCTTCAACGTGCACAT 15592 Query 55837 GGAGAATCCTTCACTG-GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGAC 55895 | |||| || | | ||| | | ||| |||||||||||| |||||||||||| | Sbjct 15593 GAGCGATCC-GAACAGCGGTAAGCTCACCTCCTTGCACTTTTACGCGTGGAAGAAGGGCC 15651 Query 55896 TCAAGACGGGTATGTACTATCTGCGGACCCGCGC 55929 | ||||| || |||||||| ||||| | ||||| Sbjct 15652 TGAAGACCGGCATGTACTACCTGCGCTCTCGCGC 15685 >seq13 Length=549623 Score = 127 bits (140), Expect = 2e-24 Identities = 202/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||||||||||| || | ||| || |||||| || ||| || ||||| ||||| Sbjct 19916 CGAGTGAAGATGTAACGTGGGCTTGCGTGATCCTTACCGCCTTGCAAACGCGTACCAAAT 19857 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 || || ||| |||| | ||||| |||||| | || ||||||| || ||||| || Sbjct 19856 TGACCGCTCGGCACGAGCAAGTTGATGTTGTTCGAACCGACGAAATCTTGCGCCAAGTTG 19797 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 || || || | || ||||| ||||| |||||||| | ||||||| || || Sbjct 19796 ACGATGGTCATCGCGAGTGAAGCTTCGCCGTGATGATACGCGGAGTGCTCCGAGACATAG 19737 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||||||| || || || |||| | | || || ||||| || | | | | Sbjct 19736 CCGCTCAACTGCGCGACTTTGATATCCGACTTGAGCTTGCGCTTGAAGCATGAGAAGAGA 19677 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 |||||||| || || || || || |||||||||| | |||||||| || Sbjct 19676 ACCTTGCGTTGTGAGGGCTTGAAGCCGTCCACCATGCTCGGAATCGAGCG 19627 Score = 116 bits (128), Expect = 4e-21 Identities = 206/295 (70%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACC 117357 ||||||||||| |||||||| | |||||| |||||| || || |||| ||||||||| Sbjct 19919 AGGCGAGTGAAGATGTAACGTGGGCTTGCGTGATCCTTACCGCCTTGCAA-ACGCGTACC 19861 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||||| || |||||| | | | ||| | |||||| | || || || | ||| ||||| Sbjct 19860 AAATTGACCGCTCGGCACGAGCAAGTTGATGTTGTTCGAACCGACGAAATCTTGCGCCAA 19801 Query 117418 GTTGACAATCGTACCTTG-GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 |||||| || || | | | ||| || || || || |||||||| | ||||||| | Sbjct 19800 GTTGACGATGGT-CATCGCGAGTGAAGCTTCGCCGTGATGATACGCGGAGTGCTCCGAGA 19742 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 | ||||| || ||| || || || || || ||| | || || ||||| ||| | Sbjct 19741 CATAGCCGCTCAACTGCGCGACTTTGATATCCGACTTGAGCTTGCGCTTGAAGCATGAGA 19682 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 | | |||||||| || ||||| | || ||| ||| | || ||||| || Sbjct 19681 AGAGAACCTTGCGTTGTGAGGGCTTGAAGCCGTCCACCATGCTCGGAATCGAGCG 19627 >seq14 Length=547765 Score = 118 bits (130), Expect = 1e-21 Identities = 184/263 (70%), Gaps = 9/263 (3%) Strand=Plus/Minus Query 124512 GTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCACATG 124571 || ||||| ||| | | ||| | ||||| | || || || | ||| ||||||| Sbjct 96262 GTTTCACCGGTGGCGACGACGTAGTCTTCCGCCTTCTCTTGTTGAAGCATCTTCCACATG 96203 Query 124572 GCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCG 124631 | |||||||| ||||||||||| |||||||||||||||| ||| ||||| | Sbjct 96202 CACTCCACGTAGTCGCGAGCGTGCCCCCAATCGCGCTTGGCATCCAAGTTACCGAGGTAC 96143 Query 124632 AT------TGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTC 124685 | | ||||| ||| |||| | | ||| | | || || ||||| |||||| Sbjct 96142 AAGCACTCTTGCTTGCCCGCCTTGATG---TTCGCGACGGCAAGGGTGATCTTACGCGTC 96086 Query 124686 ACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAAC 124745 ||||| || |||||| |||||||||||||||| |||||| | ||||| || Sbjct 96085 ACAAAGGTTTCCCCTCGTCGCGGCGACTCGTGGTTGAACAAAATGCCGTTGCACGCGTAC 96026 Query 124746 ATCCCGTACGACTCGCGGTAGTT 124768 || ||||||||||||||||||| Sbjct 96025 ATATCGTACGACTCGCGGTAGTT 96003 >seq12 Length=542657 Score = 114 bits (126), Expect = 1e-20 Identities = 350/532 (66%), Gaps = 12/532 (2%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| ||||||| |||| ||| || | || || || || | | || |||| | ||| Sbjct 198050 TGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTTAAACCGCGCATCAATCCT 198109 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 ||||| |||| ||| |||||||| ||||| || |||||||||||||| |||||||| ||| Sbjct 198110 CGCTTTTTCAGCCAGAAGATGGCGCAGAATGACCCACTGAAGAAGATTCCTTCGACGCAC 198169 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCAT 74942 || || | || || | || ||||| || ||| | |||||| | ||||| Sbjct 198170 GCGAATCCCACCAGCCTTTCGGCGAAGCTCGCGTCGCTACCGATCCAATGAAGCGCCCAG 198229 Query 74943 TCAGCTTT--TCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTC- 74999 || ||||| ||| || | || || || | || || | || | | ||| Sbjct 198230 TCTGCTTTCATCG--CCACAGTCGGCACTGTGTGAATGGCGCGAAACAATTCGGATTTCT 198287 Query 75000 TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGAC 75059 ||||| |||||||||| | | |||| | | || |||||| |||| ||||| | Sbjct 198288 TCTTC-GGATCCTTGATGTACGTGTCCAAAAGCAGCGAGTACATCTCGCTGTGAATGTTC 198346 Query 75060 TCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGA 75118 ||| | ||| || | ||||||| || |||||||||| || ||| || || | Sbjct 198347 TCGAT-CGCGAGTTGAAATCCGTAGAACGATCGCGCCTCTGGAAGCTGCACGTCGCTCAT 198405 Query 75119 AAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 || | | | |||||| | || |||||||| | ||||||||| |||| || Sbjct 198406 GAATCGCGAGCACAGATTCTCGAGAACAATGCCGTCGCTCGAGGCGAAAAACGCCA--AC 198463 Query 75179 CATTTTGATA--AAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCC 75236 | || | ||||| ||| | || | || | | ||||||||| ||| | Sbjct 198464 ACGTGAGACACGAAGTGCTTCTCGTTCTCGTTCAGCGTCTGCCAATCCTTATAGTCGTAC 198523 Query 75237 GCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 | |||||||| |||||| ||||||| || ||| | |||||| || |||| Sbjct 198524 GTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCTCCGCCTTCTTATACA 198575 >seq5 Length=835544 Score = 102 bits (112), Expect = 9e-17 Identities = 234/346 (68%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 130870 CGTCGTCCACTTTGCAGCGCAGTCATTTGTGGATCTGAGTTTCGAGCAGTCGTTCCAGTT 130929 |||| | |||||||| ||| || | ||||| | |||| | | || || ||| Sbjct 766665 CGTCCTGCACTTTGCGGCGGAGACGCACGTGGACGCGTCGTTCGGGAATTCATTGGCGTT 766606 Query 130930 TACACGG-GAC-AATGTGCTCGGAACTCATGTCCTACTCGAGACGGTTCGCAATTATGGC 130987 ||||| ||| || || |||| || || ||| |||||| ||| || | || Sbjct 766605 --CACGGAGACGAACGTCATCGGCACGCACGTCGCGCTCGAGGCGGCGCGGCGGTGCGGG 766548 Query 130988 AAGATTCAGCGTTTCGTGCACGTGAGCACGGACGAGGTGTACGGTGAGGTTGATGGTCAC 131047 | |||| | || |||||||||||||||||||| ||||||||||| ||| | ||||| Sbjct 766547 ACGATTGAACGGTTCGTGCACGTGAGCACGGATGAGGTGTACGGAGAGAC-GTTGGTCGA 766489 Query 131048 GTGACG-TGTGACGAGACGGCAGCATTAAACCCAATGAATCCCTACGCGGCAAGCAAAGC 131106 || | | || | |||| | | || || | |||||| || |||| ||||| Sbjct 766488 TGGAGGGTCGGAGGGGACGTCGGTGTTGGCGCCGACGAATCCGTATTCGGCGTCGAAAGC 766429 Query 131107 GGCTGCTGAGCTCTATGTCCGGGCGTACACCAAGTGCTACAACCTACCGTGCATCATTAC 131166 ||| || ||| | ||| ||||||| | || ||||| | |||| | |||| || Sbjct 766428 GGCGGCGGAGATGCTCGTCGTGGCGTACGGGACGTCGTACAATTTGCCGTACGTCATCAC 766369 Query 131167 ACGCGGAAACAACGTGTTTGGGCCGAAGCAATACCCGGAAAAGGTG 131212 | || |||||||||| ||||||| ||| || |||||||||||| Sbjct 766368 GAGAGGGAACAACGTGTACGGGCCGAGGCAGTATCCGGAAAAGGTG 766323 >seq8 Length=717457 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 || |||||||| || |||||||| | ||| |||||| ||||| |||||| ||||||| Sbjct 90046 CCCGGCATAAGACCGCGCTTCTTAAGCCAGTAGATGGAGCAGAACGAACCAGAGAAGAAG 90105 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCA-T 74926 || || || | ||||| || || | || || | || |||| | ||| |||| | Sbjct 90106 ATACCCTCAATGCACGCGAACGCCAGCAGACGCTCGGCAAACGAGTCGCTGGA-GTCAAT 90164 Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGA 74985 ||| || ||||| ||||| || | | | | |||| |||| || ||||| || ||| Sbjct 90165 CCACTTCAACGCCCAGTCAGCCTT-CTTCTTAACGCATGGGATGGTCTCGATAGCGCGGA 90223 Query 74986 AGAGGCTTGC-CTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCA 75030 | | | | || |||||| | |||||||||||| || ||| |||| Sbjct 90224 ACAAG-TGGCTCTTCTCGGCCGGATCCTTGACGTACTGGTCGATCA 90268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215863196000