Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 223 4e-53
seq13 127 2e-24
seq14 118 1e-21
seq12 114 1e-20
seq5 102 9e-17
seq8 89.7 6e-13
>seq1
Length=1096037
Score = 223 bits (246), Expect = 4e-53
Identities = 500/736 (68%), Gaps = 20/736 (3%)
Strand=Plus/Plus
Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301
||| |||||| || | ||||| || | | |||||||| |||| || |||||||
Sbjct 13946 TGATACGTACCACATGCTGAGCGAACGATGGATGACGCACGCGTCGCCGACGTTGTTCAA 14005
Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
||||||||| | || ||| | || |||||| || | |||||||| || ||
Sbjct 14006 CGCTGGTACCCCGCGTCCGCAGCTTTCTTCGTGCTTCTTGATTTGCATGAAGGAAGATTC 14065
Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421
||||| ||||| ||||| ||||| |||||||| || || || || | | || ||
Sbjct 14066 CATCGAGGGCATTTACGACACGCTGAAGGAGTGCGCGTGTATTTCAAAATCTGCCGGAGG 14125
Query 53422 TATCGGTAT--CCACTGCTCGAACGTCCGTGCGAACGGCACAC-CAATCAAGGGGACGAA 53478
||||||| | ||| | | ||| |||| || | || | || || ||| || ||
Sbjct 14126 TATCGGTTTGTCCA-TCCACGATA-TCCGAGCTACGAGCTCTTACATTCGAGGC-ACCAA 14182
Query 53479 CGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536
||| ||||| | || ||| | || ||||| || || |||||| ||||||| || |||
Sbjct 14183 CGGAACGTCGA--ACGGCATCATTCCGATGCTGCGTGTGTTCAACGACACGGCTCGCTAC 14240
Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596
|| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 14241 GTGGACCAAGGTGGTGGTAAGCGCAAGGGAGCGTTCGCCATCTACCTCGAGCCGTGGCAC 14300
Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656
|| ||||| | || | || || ||||| ||| || ||| | || || ||||
Sbjct 14301 GCAGACATCTTTGACTGGCTTGACTTGCGTAAGAACCACGGTAAGGAGGAAGCGCGCGCG 14360
Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
|| || ||||| ||| || ||||||| ||| | || ||| | || ||| | |
Sbjct 14361 CGCGATCTGTTCTACGGC-CTGTGGACGAACGACTTGTTTATGAAGCGCGTCGAGGCGAA 14419
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTG 53774
|| || ||| |||||||||||||||||||||| || | | | || || ||||
Sbjct 14420 CGGCGAATGGACGTTGATGTGCCCGAACGAGTGCCCTGGATTGTCTGACTG-CTGGGGTG 14478
Query 53775 AGGAGTTTAACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGG 53831
|||| || ||| | ||||| | ||||| || |||| |||||||
Sbjct 14479 AGGAATT---CGAAACTCTGTATGAAAAGTACGAAGCGGAGGGTAAGGGTAAGAAGACCA 14535
Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891
||||||| | | | ||| ||| |||||| || ||| || ||||| || | || |
Sbjct 14536 TCAAGGCTCAACAACTTTGGTTTGCCATCCTCGAGTCCCAAGTTGAGACCGGTAACCCAT 14595
Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCA 53951
||||| || |||||| || |||| ||| ||||| | ||| ||||| ||||
Sbjct 14596 ACATGCTCTTTAAGGATGCGTGCAACCGCAAGTCTAACCAACAAAACCTCGGCACGATCA 14655
Query 53952 AATCGAGCAACTTATG 53967
| || |||||| ||
Sbjct 14656 AGTCCTCCAACTTGTG 14671
Score = 147 bits (162), Expect = 2e-30
Identities = 308/454 (68%), Gaps = 4/454 (1%)
Strand=Plus/Plus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| | |||||||| ||||||| || || ||||| |||||||| ||| |||| || |
Sbjct 15234 GGCGTTCGCAACTCTTTGCTCGTCGCTCCGATGCCGACCGCGTCTACGTCTCAAATTCTT 15293
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|||||||||||| ||||||||||||||| | ||||||||| ||||| | |
Sbjct 15294 GGCAACAACGAGTGCTTCGAGCCGTACACGTCGAACATCTACGCTCGCCGCGTGTTGTCC 15353
Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657
||||||||| | | | ||| ||||| | | || || || | | ||||
Sbjct 15354 GGTGAGTTTACCGTCGTGAACCAGCACTTGTTGTCTGATCTCACTGAGCTTGGCCTGTGG 15413
Query 55658 AACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAGATT 55717
| ||| || | |||| || | | |||| || ||||| || | |||| |||
Sbjct 15414 GATCCGGAGCTGAAGAACGAGCTCATCTCGAACAACGGTTCCGTGCAAGACTTGGACATT 15473
Query 55718 CCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG-TCTGAT 55776
|| | ||| | |||||| |||||||||||||| || | | | | ||| |
Sbjct 15474 CCGGACAACTTGAAGAACATTTACAAGACGGTGTGGGAGA-TCAAGCAACGTGTTCTTGT 15532
Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836
||||||| || ||| | || |||| ||| || ||||| ||||| | ||| | |||
Sbjct 15533 TGACATGGCCGCGGATAGAGGCGCGTTCATTGATCAGTCTCAGTCCTTCAACGTGCACAT 15592
Query 55837 GGAGAATCCTTCACTG-GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGAC 55895
| |||| || | | ||| | | ||| |||||||||||| |||||||||||| |
Sbjct 15593 GAGCGATCC-GAACAGCGGTAAGCTCACCTCCTTGCACTTTTACGCGTGGAAGAAGGGCC 15651
Query 55896 TCAAGACGGGTATGTACTATCTGCGGACCCGCGC 55929
| ||||| || |||||||| ||||| | |||||
Sbjct 15652 TGAAGACCGGCATGTACTACCTGCGCTCTCGCGC 15685
>seq13
Length=549623
Score = 127 bits (140), Expect = 2e-24
Identities = 202/290 (70%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| ||||||||||| || | ||| || |||||| || ||| || ||||| |||||
Sbjct 19916 CGAGTGAAGATGTAACGTGGGCTTGCGTGATCCTTACCGCCTTGCAAACGCGTACCAAAT 19857
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
|| || ||| |||| | ||||| |||||| | || ||||||| || ||||| ||
Sbjct 19856 TGACCGCTCGGCACGAGCAAGTTGATGTTGTTCGAACCGACGAAATCTTGCGCCAAGTTG 19797
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
|| || || | || ||||| ||||| |||||||| | ||||||| || ||
Sbjct 19796 ACGATGGTCATCGCGAGTGAAGCTTCGCCGTGATGATACGCGGAGTGCTCCGAGACATAG 19737
Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|| ||||||||| || || || |||| | | || || ||||| || | | | |
Sbjct 19736 CCGCTCAACTGCGCGACTTTGATATCCGACTTGAGCTTGCGCTTGAAGCATGAGAAGAGA 19677
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315
|||||||| || || || || || |||||||||| | |||||||| ||
Sbjct 19676 ACCTTGCGTTGTGAGGGCTTGAAGCCGTCCACCATGCTCGGAATCGAGCG 19627
Score = 116 bits (128), Expect = 4e-21
Identities = 206/295 (70%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACC 117357
||||||||||| |||||||| | |||||| |||||| || || |||| |||||||||
Sbjct 19919 AGGCGAGTGAAGATGTAACGTGGGCTTGCGTGATCCTTACCGCCTTGCAA-ACGCGTACC 19861
Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||||| || |||||| | | | ||| | |||||| | || || || | ||| |||||
Sbjct 19860 AAATTGACCGCTCGGCACGAGCAAGTTGATGTTGTTCGAACCGACGAAATCTTGCGCCAA 19801
Query 117418 GTTGACAATCGTACCTTG-GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476
|||||| || || | | | ||| || || || || |||||||| | ||||||| |
Sbjct 19800 GTTGACGATGGT-CATCGCGAGTGAAGCTTCGCCGTGATGATACGCGGAGTGCTCCGAGA 19742
Query 117477 CGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536
| ||||| || ||| || || || || || ||| | || || ||||| ||| |
Sbjct 19741 CATAGCCGCTCAACTGCGCGACTTTGATATCCGACTTGAGCTTGCGCTTGAAGCATGAGA 19682
Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591
| | |||||||| || ||||| | || ||| ||| | || ||||| ||
Sbjct 19681 AGAGAACCTTGCGTTGTGAGGGCTTGAAGCCGTCCACCATGCTCGGAATCGAGCG 19627
>seq14
Length=547765
Score = 118 bits (130), Expect = 1e-21
Identities = 184/263 (70%), Gaps = 9/263 (3%)
Strand=Plus/Minus
Query 124512 GTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCACATG 124571
|| ||||| ||| | | ||| | ||||| | || || || | ||| |||||||
Sbjct 96262 GTTTCACCGGTGGCGACGACGTAGTCTTCCGCCTTCTCTTGTTGAAGCATCTTCCACATG 96203
Query 124572 GCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCG 124631
| |||||||| ||||||||||| |||||||||||||||| ||| ||||| |
Sbjct 96202 CACTCCACGTAGTCGCGAGCGTGCCCCCAATCGCGCTTGGCATCCAAGTTACCGAGGTAC 96143
Query 124632 AT------TGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTC 124685
| | ||||| ||| |||| | | ||| | | || || ||||| ||||||
Sbjct 96142 AAGCACTCTTGCTTGCCCGCCTTGATG---TTCGCGACGGCAAGGGTGATCTTACGCGTC 96086
Query 124686 ACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAAC 124745
||||| || |||||| |||||||||||||||| |||||| | ||||| ||
Sbjct 96085 ACAAAGGTTTCCCCTCGTCGCGGCGACTCGTGGTTGAACAAAATGCCGTTGCACGCGTAC 96026
Query 124746 ATCCCGTACGACTCGCGGTAGTT 124768
|| |||||||||||||||||||
Sbjct 96025 ATATCGTACGACTCGCGGTAGTT 96003
>seq12
Length=542657
Score = 114 bits (126), Expect = 1e-20
Identities = 350/532 (66%), Gaps = 12/532 (2%)
Strand=Plus/Plus
Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822
||| ||||||| |||| ||| || | || || || || | | || |||| | |||
Sbjct 198050 TGCAAGCCTTCGTCTCGGCTGATGAGCTCGTTGGAGAAGGTTAAACCGCGCATCAATCCT 198109
Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882
||||| |||| ||| |||||||| ||||| || |||||||||||||| |||||||| |||
Sbjct 198110 CGCTTTTTCAGCCAGAAGATGGCGCAGAATGACCCACTGAAGAAGATTCCTTCGACGCAC 198169
Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCAT 74942
|| || | || || | || ||||| || ||| | |||||| | |||||
Sbjct 198170 GCGAATCCCACCAGCCTTTCGGCGAAGCTCGCGTCGCTACCGATCCAATGAAGCGCCCAG 198229
Query 74943 TCAGCTTT--TCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTC- 74999
|| ||||| ||| || | || || || | || || | || | | |||
Sbjct 198230 TCTGCTTTCATCG--CCACAGTCGGCACTGTGTGAATGGCGCGAAACAATTCGGATTTCT 198287
Query 75000 TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGAC 75059
||||| |||||||||| | | |||| | | || |||||| |||| ||||| |
Sbjct 198288 TCTTC-GGATCCTTGATGTACGTGTCCAAAAGCAGCGAGTACATCTCGCTGTGAATGTTC 198346
Query 75060 TCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGA 75118
||| | ||| || | ||||||| || |||||||||| || ||| || || |
Sbjct 198347 TCGAT-CGCGAGTTGAAATCCGTAGAACGATCGCGCCTCTGGAAGCTGCACGTCGCTCAT 198405
Query 75119 AAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178
|| | | | |||||| | || |||||||| | ||||||||| |||| ||
Sbjct 198406 GAATCGCGAGCACAGATTCTCGAGAACAATGCCGTCGCTCGAGGCGAAAAACGCCA--AC 198463
Query 75179 CATTTTGATA--AAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCC 75236
| || | ||||| ||| | || | || | | ||||||||| ||| |
Sbjct 198464 ACGTGAGACACGAAGTGCTTCTCGTTCTCGTTCAGCGTCTGCCAATCCTTATAGTCGTAC 198523
Query 75237 GCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288
| |||||||| |||||| ||||||| || ||| | |||||| || ||||
Sbjct 198524 GTCAAATCAACCTCCTCCGCCGTCCAAAAGCTCGCCTCCGCCTTCTTATACA 198575
>seq5
Length=835544
Score = 102 bits (112), Expect = 9e-17
Identities = 234/346 (68%), Gaps = 6/346 (2%)
Strand=Plus/Minus
Query 130870 CGTCGTCCACTTTGCAGCGCAGTCATTTGTGGATCTGAGTTTCGAGCAGTCGTTCCAGTT 130929
|||| | |||||||| ||| || | ||||| | |||| | | || || |||
Sbjct 766665 CGTCCTGCACTTTGCGGCGGAGACGCACGTGGACGCGTCGTTCGGGAATTCATTGGCGTT 766606
Query 130930 TACACGG-GAC-AATGTGCTCGGAACTCATGTCCTACTCGAGACGGTTCGCAATTATGGC 130987
||||| ||| || || |||| || || ||| |||||| ||| || | ||
Sbjct 766605 --CACGGAGACGAACGTCATCGGCACGCACGTCGCGCTCGAGGCGGCGCGGCGGTGCGGG 766548
Query 130988 AAGATTCAGCGTTTCGTGCACGTGAGCACGGACGAGGTGTACGGTGAGGTTGATGGTCAC 131047
| |||| | || |||||||||||||||||||| ||||||||||| ||| | |||||
Sbjct 766547 ACGATTGAACGGTTCGTGCACGTGAGCACGGATGAGGTGTACGGAGAGAC-GTTGGTCGA 766489
Query 131048 GTGACG-TGTGACGAGACGGCAGCATTAAACCCAATGAATCCCTACGCGGCAAGCAAAGC 131106
|| | | || | |||| | | || || | |||||| || |||| |||||
Sbjct 766488 TGGAGGGTCGGAGGGGACGTCGGTGTTGGCGCCGACGAATCCGTATTCGGCGTCGAAAGC 766429
Query 131107 GGCTGCTGAGCTCTATGTCCGGGCGTACACCAAGTGCTACAACCTACCGTGCATCATTAC 131166
||| || ||| | ||| ||||||| | || ||||| | |||| | |||| ||
Sbjct 766428 GGCGGCGGAGATGCTCGTCGTGGCGTACGGGACGTCGTACAATTTGCCGTACGTCATCAC 766369
Query 131167 ACGCGGAAACAACGTGTTTGGGCCGAAGCAATACCCGGAAAAGGTG 131212
| || |||||||||| ||||||| ||| || ||||||||||||
Sbjct 766368 GAGAGGGAACAACGTGTACGGGCCGAGGCAGTATCCGGAAAAGGTG 766323
>seq8
Length=717457
Score = 89.7 bits (98), Expect = 6e-13
Identities = 160/226 (71%), Gaps = 6/226 (3%)
Strand=Plus/Plus
Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867
|| |||||||| || |||||||| | ||| |||||| ||||| |||||| |||||||
Sbjct 90046 CCCGGCATAAGACCGCGCTTCTTAAGCCAGTAGATGGAGCAGAACGAACCAGAGAAGAAG 90105
Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCA-T 74926
|| || || | ||||| || || | || || | || |||| | ||| |||| |
Sbjct 90106 ATACCCTCAATGCACGCGAACGCCAGCAGACGCTCGGCAAACGAGTCGCTGGA-GTCAAT 90164
Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGA 74985
||| || ||||| ||||| || | | | | |||| |||| || ||||| || |||
Sbjct 90165 CCACTTCAACGCCCAGTCAGCCTT-CTTCTTAACGCATGGGATGGTCTCGATAGCGCGGA 90223
Query 74986 AGAGGCTTGC-CTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCA 75030
| | | | || |||||| | |||||||||||| || ||| ||||
Sbjct 90224 ACAAG-TGGCTCTTCTCGGCCGGATCCTTGACGTACTGGTCGATCA 90268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215863196000
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