Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq13 131 1e-25 seq3 96.9 3e-15 seq8 91.5 1e-13 >seq13 Length=549623 Score = 131 bits (144), Expect = 1e-25 Identities = 208/296 (70%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 135460 GACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCA 135519 |||||| ||| | ||||||||||| ||| |||| | | ||| | ||||| Sbjct 291930 GACGCACGACGAACTATGGAACGCGGCGCAAAAAGAGCTGTATCATCTAGGAAGGATGCA 291989 Query 135520 CGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGA 135579 |||||| ||| | ||||| |||||||| |||||| | || ||| | | || || | | Sbjct 291990 CGGATTCATGAGAATGTACTGGGCAAAGAAGATACTCGAGTGGACGCCGTCTCCGGAAAT 292049 Query 135580 GGCGCTACA-ACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAA 135638 ||||| | ||| || || | || || || |||||| |||| |||| | | Sbjct 292050 TGCGCTTGAGACA-GCCATCCAACTCAACGACACGTATGCTTTAGACGGACTCGATCCGA 292108 Query 135639 ATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGC 135698 | |||||||| || || |||||||| || ||| || ||||||||||| ||||| |||| Sbjct 292109 ACGGCTACGTCGGATGCATGTGGTCAATCGCCGGCGTGCACGATCAAGGGTGGAAAGAGC 292168 Query 135699 GCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTT 135754 || || || |||||| |||| ||||||||||| | ||| || | | |||| ||| Sbjct 292169 GCGCCGTCTTCGGCAAGGTTCGGTATATGAACTACGCCGGGTGCAAACGAAAGTTT 292224 >seq3 Length=997348 Score = 96.9 bits (106), Expect = 3e-15 Identities = 186/269 (69%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGA-GAAGGCAAAATGCA 135519 ||||| ||| |||||||||||||| || || | || || | | ||||| ||||| Sbjct 935083 ACGCACGACGATTTGTGGAACGCGGCGCAGCGAGA-ATTGCGCTATGGGGGCAAGATGCA 935025 Query 135520 CGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGA 135579 ||| || |||||||| ||||| || ||||| |||| ||| | | || || | | | Sbjct 935024 CGGCTTCTGCCGCATGTACTGGGCCAAGAAGATCCTGGAGTGGACCGAGTCCCCCGAACA 934965 Query 135580 GGCGCTACAACACG-CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAA 135638 ||||| ||| | | || | | ||||| || | | || || |||||| | | Sbjct 934964 AGCGCT-CAAGTGGTCCATCTACCTGAATGACACGTATTCTCTTGACGGTCGCGATCCGA 934906 Query 135639 ATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGC 135698 || || || || || |||||||| || |||||| ||||| ||||| ||||| |||| Sbjct 934905 GCGGGTATGTCGGCTGCATGTGGTCCATCGTCGGTGTTCACGACCAAGGTTGGAAAGAGC 934846 Query 135699 GCAAAGTGTTTGGCAAGATTCGCTATATG 135727 || | || || || |||||||| || ||| Sbjct 934845 GCGAGGTTTTCGGTAAGATTCGTTACATG 934817 >seq8 Length=717457 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || ||| | || || | || ||||| | || ||| | || || | || || Sbjct 310444 TGACTGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGG 310503 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || ||||| || || ||||| || || ||||| || ||||| || | ||| || | Sbjct 310504 CGAAGATCCAAGATAAGGAGGGCATCCCGCCGGATCAGCAACGTTTGATTTTCGCGGGGA 310563 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAACATTCAAAAGGAGTCGACCTTA 27188 | || | || ||| | || |||| || |||||||||| ||||||||||| || | Sbjct 310564 AGCAGCTCGAGGACGGC-CGCACGTTGGCGGATTACAACATCCAAAAGGAGTCTACGCTC 310622 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||||| ||||| || Sbjct 310623 CACTTGGTGTTGCGCTTGCGAGGTGGTAT 310651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918291270400