Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 >seq1 Length=1096037 Score = 125 bits (138), Expect = 6e-24 Identities = 377/582 (65%), Gaps = 0/582 (0%) Strand=Plus/Plus Query 34147 GAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 |||||| || || ||||| || || || | || ||||||| ||| |||| | | Sbjct 960940 GAAGGGAGATCGCACCGGTACAGGTACGATTTCTACCTTCGGCAACCAGATGCGATTCGA 960999 Query 34207 CCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGA 34266 || || || || ||||| ||||||| || ||||| | |||| ||||| | ||| Sbjct 961000 TCTGCGTCGCTCGTTCCCGCTCTTGACGACCAAGCGTGTTTTCTGGCGAGGCGTCGCCGA 961059 Query 34267 GGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGT 34326 ||||||| | ||||||||| ||| | || || | || || | | | | | Sbjct 961060 GGAGCTGTTATGGTTCGTGGCGGGCGAGACCAATGCGAACAAGTTGGCAGAGAAGAAGAT 961119 Query 34327 GAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCG 34386 || |||||||||| |||| ||||| | | ||||| ||||| | || Sbjct 961120 CAACATCTGGGACGGCAACGGAAGCCGAGAGTATTTGGACTCCATCGGGTTGACCGAGCG 961179 Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| ||| || | ||||| || ||||| ||||| |||||||||||||| || || || Sbjct 961180 CGAGGTGGGTGATCTCGGCCCCGTTTACGGTTTCCAATGGAGACACTTTGGCGCCGAATA 961239 Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGA 34506 | | | || ||||| |||| |||| | || || || | || ||| | Sbjct 961240 CACGAACATGCACGCCGACTACACGGGCAAGGGCGTTGATCAATTGGCCGAGGTTATCAA 961299 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 || | ||| || || || | | ||| | | || ||||| ||| | Sbjct 961300 CAAGATCAAGAATAATCCGACCGATCGTCGCATCTTACTTACAGCATGGAATCCGGCAGC 961359 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 || ||||| || || |||||||||| ||||||| ||||||||||| || || Sbjct 961360 GCTAAAGGAAATGGCTCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTCGCCAACGG 961419 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 || || |||||| | || || || ||| | |||||||| | || || |||||||| Sbjct 961420 CGAATTGAGCTGCCAAATGTACCAGCGCTCGTGCGACATGGGTCTCGGCGTCCCGTTCAA 961479 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 ||| || ||| | |||||||| | ||||||||| || || Sbjct 961480 CATCGCGTCGTACTCCCTGCTCACCTGCATGATCGCGCAAGT 961521 Score = 125 bits (138), Expect = 6e-24 Identities = 377/582 (65%), Gaps = 0/582 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || || ||||||||| | |||||||| | ||| || ||||||||||| || || | Sbjct 961521 ACTTGCGCGATCATGCAGGTGAGCAGGGAGTACGACGCGATGTTGAACGGGACGCCGAGA 961462 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 |||||||| | ||| || || || | |||||| || || || || ||||||||||| Sbjct 961461 CCCATGTCGCACGAGCGCTGGTACATTTGGCAGCTCAATTCGCCGTTGGCGACGTAGAAC 961402 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 ||||||| |||||||||| || || ||||| || | ||| ||||| || Sbjct 961401 TGGCAGAACATGTGGCACGGCGGCAGAGCCATTTCCTTTAGCGCTGCCGGATTCCATGCT 961342 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856 | | ||| | | || || || ||| | ||| ||| || | || Sbjct 961341 GTAAGTAAGATGCGACGATCGGTCGGATTATTCTTGATCTTGTTGATAACCTCGGCCAAT 961282 Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916 || || | |||| |||| ||||| || | | | || || || ||||||||| Sbjct 961281 TGATCAACGCCCTTGCCCGTGTAGTCGGCGTGCATGTTCGTGTATTCGGCGCCAAAGTGT 961222 Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976 ||||| ||||| ||||| || ||||| | || ||| |||| || | ||||| Sbjct 961221 CTCCATTGGAAACCGTAAACGGGGCCGAGATCACCCACCTCGCGCTCGGTCAACCCGATG 961162 Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGC 7036 ||||| | | ||||| |||| |||||||||| || | | | | | | Sbjct 961161 GAGTCCAAATACTCTCGGCTTCCGTTGCCGTCCCAGATGTTGATCTTCTTCTCTGCCAAC 961102 Query 7037 TCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAG 7096 | || | || || | ||| ||||||||| | |||||||||| | ||||| |||| Sbjct 961101 TTGTTCGCATTGGTCTCGCCCGCCACGAACCATAACAGCTCCTCGGCGACGCCTCGCCAG 961042 Query 7097 TACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTG 7156 | ||||| || ||||||| ||||| || || || || | | |||| ||| || Sbjct 961041 AAAACACGCTTGGTCGTCAAGAGCGGGAACGAGCGACGCAGATCGAATCGCATCTGGTTG 960982 Query 7157 CCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTC 7198 ||||| || | || || || ||||| || || |||||| Sbjct 960981 CCGAAGGTAGAAATCGTACCTGTACCGGTGCGATCTCCCTTC 960940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262287934400