Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq12 140 8e-28 seq7 127 5e-24 seq8 118 2e-21 >seq12 Length=542657 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || || || | || | || || Sbjct 189329 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCC 189270 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||||| || || || || | ||||||||||| Sbjct 189269 TCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCT 189210 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| ||| || || ||||| || || ||| Sbjct 189209 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTC 189150 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | ||||| Sbjct 189149 TTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || || || | || | || || Sbjct 189557 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCC 189498 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||||| || || || || | ||||||||||| Sbjct 189497 TCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCT 189438 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| ||| || || ||||| || || ||| Sbjct 189437 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTC 189378 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | ||||| Sbjct 189377 TTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || || || | || | || || Sbjct 189785 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCC 189726 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||||| || || || || | ||||||||||| Sbjct 189725 TCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCT 189666 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| ||| || || ||||| || || ||| Sbjct 189665 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTC 189606 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | ||||| Sbjct 189605 TTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| || ||||| ||||| ||||| ||| || |||||| Sbjct 188644 CCCTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATCGTGTCCGAGGACTCCACCTCG 188585 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||||||||||||||| || || || || | |||||| Sbjct 188584 AGCGTGATCGTCTTTCCCGTGAGCGTTTTGACGAAGATCTGCAT 188541 >seq7 Length=770246 Score = 127 bits (140), Expect = 5e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || |||||||| ||||||||||| || || || || || | || || || || || Sbjct 134624 GTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGTTG 134565 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || ||||| || || || || | || ||||| || |||||||| Sbjct 134564 CTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGGATCCCCTCCTTATCTTGGATCTT 134505 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| ||||||||||| ||| || ||||| | ||||| ||||| ||||| Sbjct 134504 CGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTACCCGT 134445 >seq8 Length=717457 Score = 118 bits (130), Expect = 2e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| ||||||||||| |||||||| | || | || || || ||||| Sbjct 310625 GTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCCAACGTGCGGCCGTCCTCGAGCTG 310566 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || | ||||| || || || || | || ||||| || |||||||| Sbjct 310565 CTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGGATGCCCTCCTTATCTTGGATCTT 310506 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| ||||||||||| ||| || ||||| | ||||| ||||| || || Sbjct 310505 CGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTACCAGT 310446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151702967300