Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq12 87.8 2e-12
>seq12
Length=542657
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || | ||||| | |||||| || |||||| ||| || || || || || ||
Sbjct 189348 CATGCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 189289
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
||| | || || |||| || ||||| || || || || || | ||| ||||| || |
Sbjct 189288 GGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGG 189229
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACT 39232
|| | || || ||||| ||| ||| |||| ||| | | | || || ||||
Sbjct 189228 CGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACT 189170
Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| || | ||| || | || ||||| ||||| || || |||||||||||
Sbjct 189169 CCACTTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||| || | ||||| | |||||| || |||||| ||| || || || || || ||
Sbjct 189576 CATGCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 189517
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173
||| | || || |||| || ||||| || || || || || | ||| ||||| || |
Sbjct 189516 GGCCAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGG 189457
Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACT 39232
|| | || || ||||| ||| ||| |||| ||| | | | || || ||||
Sbjct 189456 CGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACT 189398
Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| || | ||| || | || ||||| ||||| || || |||||||||||
Sbjct 189397 CCACTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126
||||| | |||||| || |||||| ||| || || || || || ||||| | || ||
Sbjct 189791 AAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGA 189732
Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186
|||| || ||||| || || || || || | ||| ||||| || | || | || ||
Sbjct 189731 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCC 189672
Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGT 39245
||||| ||| ||| |||| ||| | | | || || |||||||| || | |||
Sbjct 189671 TTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGT 189613
Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | || ||||| ||||| || || |||||||||||
Sbjct 189612 AATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545495298260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |