Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 158 3e-33 seq8 140 8e-28 seq7 140 8e-28 >seq12 Length=542657 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| ||||| ||||||||||| | || || Sbjct 189329 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCC 189270 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | ||||| || || ||||| || |||||||||||| Sbjct 189269 TCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCT 189210 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| ||||| || | ||| || ||| Sbjct 189209 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTC 189150 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | |||||| Sbjct 189149 TTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| ||||| ||||||||||| | || || Sbjct 189557 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCC 189498 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | ||||| || || ||||| || |||||||||||| Sbjct 189497 TCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCT 189438 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| ||||| || | ||| || ||| Sbjct 189437 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTC 189378 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | |||||| Sbjct 189377 TTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| ||||| ||||||||||| | || || Sbjct 189785 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCC 189726 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | ||||| || || ||||| || |||||||||||| Sbjct 189725 TCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCT 189666 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| ||||| || | ||| || ||| Sbjct 189665 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTC 189606 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | |||||| Sbjct 189605 TTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| ||||| ||||||||||| | ||||| Sbjct 189101 AGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCC 189042 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| || |||||||| | ||||| || || ||||| || ||| Sbjct 189041 TCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATCCCT 188991 >seq8 Length=717457 Score = 140 bits (154), Expect = 8e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 |||||| || || || ||||||| |||||||| ||||| || | || || || ||||| Sbjct 310625 GTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCCAACGTGCGGCCGTCCTCGAGCTG 310566 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 |||||| ||||| || | ||||| || || ||||| || || ||||| ||||||||||| Sbjct 310565 CTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGGATGCCCTCCTTATCTTGGATCTT 310506 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||||||||||| |||| ||||| || || ||||| ||||| || || Sbjct 310505 CGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTACCAGT 310446 Query 225690 CA 225691 || Sbjct 310445 CA 310444 >seq7 Length=770246 Score = 140 bits (154), Expect = 8e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 |||||| ||||| || ||||||| ||||| ||||| | || | || || || || || Sbjct 134624 GTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGTTG 134565 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| || ||||| || || ||||| || || ||||| ||||||||||| Sbjct 134564 CTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGGATCCCCTCCTTATCTTGGATCTT 134505 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||||||||||| |||| ||||| || || ||||| ||||| ||||| Sbjct 134504 CGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTACCCGT 134445 Query 225690 CA 225691 || Sbjct 134444 CA 134443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530894413880