Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq13 223 7e-53 seq12 179 8e-40 seq7 165 2e-35 seq8 150 4e-31 seq15 109 1e-18 seq6 91.5 3e-13 >seq13 Length=549623 Score = 223 bits (246), Expect = 7e-53 Identities = 747/1136 (66%), Gaps = 39/1136 (3%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||| ||||| | | || || || ||||| || ||||||| | || |||||| ||| Sbjct 19913 GTGAAGATGTAACGTGGGCTTGCGTGATCCTTACCGCCTTGCAAACGCGTACCAAATTGA 19854 Query 273840 CC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 || ||||| || ||| |||| |||||||| ||||||| |||| || |||| || || Sbjct 19853 CCGCTCGG-CACGAGCAAGTTGATGTTGTTCGAACCGACGAAATCTTGCGCCAAGTTGAC 19795 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958 ||| ||| | || || | |||||||| ||||| ||| ||| || | || ||| || Sbjct 19794 GATGGTCATCGCGAGTGAAGCTTCGCCGTGATGATACGCGGAGTGCTCCGAGACATAGCC 19735 Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACAC 274018 || ||||| || || || | ||| | | | || |||||||| || | | || Sbjct 19734 GCTCAACTGCGCGACTTTGATATCCGACTTGAGCTTGCGCTTGAAGCATGAGAAGAGAAC 19675 Query 274019 CTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATCATA 274078 ||| || || ||||||||||| || || || | ||||| |||| ||| ||| Sbjct 19674 CTTGCGTTGTGAGGGCTTGAAGCCGTCCACCATGCTCGGAATCGAGCGTAACAAGTCAGC 19615 Query 274079 CCGAGAGAACAAAATCAGTTCCTTGTCAATGAAGTCAGGGACGGGAA---CCTCGGGCTT 274135 | |||||||||||| |||||||||| || || || | ||| ||||| | Sbjct 19614 TCTAGAGAACAAAATGAGTTCCTTGTTGATAAACTCGTCGTATCGAATCGCCTCGCCGCT 19555 Query 274136 CTTGTGGTCGAGCTGATTACCGGGTTCGTATGCCAACATCCACTCCTTGCGGTCCTCTGC 274195 | | | || || | || || ||||| || || ||| | ||||| ||||| | Sbjct 19554 CATATCCAAGA-ATG--TGCCTGGCTCGTACGCATTCAGCCAAGCTTTGCGATCCTCGAC 19498 Query 274196 ACGAGACTTATTAAAGGAACGATCAATGAGTTCTCC-TGACTCTCCCGT--CCACGTAAA 274252 ||| ||| | || || || || | || || | || || | | ||| | || Sbjct 19497 ACGCTTCTTGCTGAACGACATGTCGATCAAGTCACCGTCACCATCGCTTTCCCAGATGAA 19438 Query 274253 CGTCTT-CGATAGGTTCTTCAAGTTAC-TGAAATAATGCTTTGCGTC-TGCGCCAGAACT 274309 |||| || | | | ||||| || ||| || | ||| || || | || | | || Sbjct 19437 ATTCTTGCGGT--GGTGATCAAGAGACGCGAAGTACTCCTTGGCTTCATTCG-CTGTGCT 19381 Query 274310 CGTACCAAGACCCTTGTAGTATTTTATCTGGTACTTAGAGTGGTCCTTTG--TAGACTTT 274367 ||||||||||||||||||||| || | || | | | || | | ||| | | || Sbjct 19380 CGTACCAAGACCCTTGTAGTACTTGA--TGCTCCATCCAGCCGAGCCTTGGTTCGCCTCC 19323 Query 274368 ACCCATTCCTCATAATCCGGAAGACTGTAGAATTCCTT-GACGTCCTTTCCCTTCTTGGC 274426 ||| ||| || || || | ||||||| |||| ||| | ||| ||||| | || Sbjct 19322 TTCCAAGTCTCGTACTCGGGCAACGTGTAGAACACCTTCGAC-TGCTTCCCCTTGGTCGC 19264 Query 274427 TACCACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAA 274486 | ||| |||||||| || | || ||||| ||||| | |||||| ||||| Sbjct 19263 CTTGATGATCGGCGTGATGAACTCGAGCAAAAAACCAGGAATCTTAAGCAGAGATGGGAA 19204 Query 274487 ACAACTATGGAAAAAGTTCATGACAAGACCTGATATGTGAGTTCCGTCAACGTCGGCATC 274546 | || || ||||| |||| |||||| ||||||| || ||| || || Sbjct 19203 GTGAGCGTGCAAGAAGTTGATGAGAAGACCCTTAATGTGAGAACCATCATGATCTTGGTC 19144 Query 274547 TGTCATGATCATAACATGTCCATACCGAAGCGA---GGAAGTATCTTTATACAACTTCCC 274603 |||||||||||| | | || || || | ||| || |||| ||| ||| || Sbjct 19143 TGTCATGATCATGAGCTTACCGTAACGCAACGATTTGGCGCTATC---GTACTCCTTGCC 19087 Query 274604 TGTTTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGC 274663 || || || ||||||||||||| | ||||||| |||| ||| |||| | | Sbjct 19086 GTGCTGCAGACCGAGAATTTGCTTGATGTTGTTGATTTCGGCGTTGTTTTTGAT-TTGGT 19028 Query 274664 CA-CAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTT 274722 || |||||||| || |||||||| | ||||| || || ||||| || |||||| | | Sbjct 19027 CATGCGAAGCATCGCGCACGTTCAGAAGTTTACCACGAAGCGGGAAGACACCATACTTGT 18968 Query 274723 CGCGCCCGATGACCGAAAGACCGGCGATCGCGAGAG--TTGCTGCTGAATCTCCCTCTGT 274780 | | || | ||| || |||||| | ||||| | ||| || ||||| || || || Sbjct 18967 CTCTGCCAACGACGGAGAGACCGCTCACAGCGAGCGCCTTG--GCAGAATCCCCTTCGGT 18910 Query 274781 GAGAATCAAAGTACACAACTTACTGTTTTTTGTGCCTGCAAAAGCCGCGTCATTCAGTTT 274840 ||||||||||||||| ||| | |||| | || ||| ||||||| || || Sbjct 18909 GAGAATCAAAGTACAAGACTCAGAGTTTCGTCCACCGGCATCGTTGGCGTCATCGAGCTT 18850 Query 274841 CGGAATACCAGT--GACGCGAGTCTTCTTGGCACCATCGGTCTTCTTTAGCTCTTT 274894 ||| || || || |||| ||| ||||||||| || |||||||| || || || Sbjct 18849 CGGGATTCCCGTCAGACGTGAG--CGCTTGGCACCGTCAGTCTTCTTCAGTTCCTT 18796 >seq12 Length=542657 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| ||| || |||| || | |||| || || |||||||||||||| || Sbjct 189572 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189513 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| || ||||| || || || ||||| |||||||||||||| || || ||| Sbjct 189512 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189453 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || ||| | ||||| |||||||| | || ||| Sbjct 189452 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189393 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||||||||| | ||||| ||||| || ||||| Sbjct 189392 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189346 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| ||| || |||| || | |||| || || |||||||||||||| || Sbjct 189800 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189741 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| || ||||| || || || ||||| |||||||||||||| || || ||| Sbjct 189740 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189681 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || ||| | ||||| |||||||| | || ||| Sbjct 189680 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189621 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||||||||| | ||||| ||||| || ||||| Sbjct 189620 TCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCAT 189574 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| ||| || |||| || | |||| || || |||||||||||||| || Sbjct 189344 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189285 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| || ||||| || || || ||||| |||||||||||||| || || ||| Sbjct 189284 AAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGG 189225 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || ||| | ||||| |||||||| | || ||| Sbjct 189224 ATGCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACT 189165 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| ||||| | ||||| ||||| || ||||| Sbjct 189164 TCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCAT 189118 Score = 100 bits (110), Expect = 6e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| || || ||| ||||||| |||||||| | || || || Sbjct 188645 ACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATCGTGTCCGAGGACTCCACCTC 188586 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||||||||| ||||| | || || ||||| |||||||| Sbjct 188585 GAGCGTGATCGTCTTTCCCGTGAGCGTTTTGACGAAGATCTGCAT 188541 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| ||| || |||| || | |||| || || |||||||||||||| || Sbjct 189116 CCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 189057 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 | ||||| |||||||| || || || ||||| |||||||||||||| || || Sbjct 189056 AAAGTGCGACCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATC 189004 >seq7 Length=770246 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||| ||| | |||| || | |||| || ||||||||||||||||| || Sbjct 134648 ACCCCCGCGCAAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGC 134589 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| ||||| || || || ||||||| |||||| || || ||| Sbjct 134588 GAGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGG 134529 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||||||||| || || ||| | ||||| |||||||| | || || Sbjct 134528 GATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 134469 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || | ||||| ||||||||||||| Sbjct 134468 CTCCAAGGTGATGGTCTTACCCGTCA 134443 >seq8 Length=717457 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| ||| | |||| || | ||| || |||||||||||||| || || Sbjct 310649 ACCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGC 310590 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||||||| ||||| || || ||||| || || ||||||||||| || || ||| Sbjct 310589 CAACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGG 310530 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||||||||| || || ||| | ||||| |||||||| | || || Sbjct 310529 GATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 310470 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || | ||||| |||||||| |||| Sbjct 310469 CTCCAAGGTGATGGTCTTACCAGTCA 310444 Score = 107 bits (118), Expect = 4e-18 Identities = 359/549 (65%), Gaps = 16/549 (3%) Strand=Plus/Minus Query 229870 TGTTCGACGCCATCGAAAACATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGT 229929 ||||| ||| ||||| | |||||| || | || || || ||||| ||||| Sbjct 90226 TGTTCCGCGCTATCGAGACCATCCCATGCGTTAAGAAGAAGGCTGACTGGGCGTTGAAGT 90167 Query 229930 GGCTGGAACCCAGTAAATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTA 229989 || | || |||| | |||||||| |||||||| | |||| | |||| ||||||||| Sbjct 90166 GGATTGACTCCAGCGACTCGTTTGCCGAGCGTCTGCTGGCGTTCGCGTGCATTGAGGGTA 90107 Query 229990 TTCTGTTCTCCGGGAGTTTCTGCGCCATCTTTTGGCTACGCAACAAGGGCG---TCATGC 230046 | | ||||| || |||||| |||||| ||||| || ||| ||| | |||| Sbjct 90106 TCTTCTTCTCTGGTTCGTTCTGCTCCATCTACTGGCTT---AAGAAGCGCGGTCTTATGC 90050 Query 230047 CCGGGCTCGGTCTG-TCGAACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTT 230105 | ||| | | || || ||||| ||||| | || || || | |||| | ||| Sbjct 90049 C-GGGTTTGACCTTCTCCAACGAGCTCATCTCTCGCGATGAGGGCTTGCACCGTGACTTT 89991 Query 230106 GGCGAGGTCTTGTATTCGAAGCTAAATAACAAACTACCTTTCGAA-ACG--GTGAAACAA 230162 | |||| || | ||| || ||||| | | |||| | | ||| | Sbjct 89990 GCTTGCCTCTTATACCAAATGCTCAACAACAAGC---CGGACGAAGAAGTCGTGCGTAAG 89934 Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 || ||||| |||| |||| | || ||||||||| | |||||| || |||| ||| Sbjct 89933 ATTGTCACCGAAGCGGTTGAGATCGAGAAGGAGTTCGTGTGCGACTCTCTTCCGTGCGCG 89874 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || | || ||||| || | | | ||| | | || || |||| ||| || || | | Sbjct 89873 CTCGTTGGTATGAACGCCGGTATGATGAGCGACTACATTGAATACGTCGCCGACCACTTG 89814 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGT-GTATAACTCCAAGAACCCCTTCGCTTTTATGGA 230341 ||| | || || || | ||| ||| ||| | |||||| || | | ||||| Sbjct 89813 TTCACCTCCCTTGG-TATGCCCAAGGAGTACAACACGGCGAACCCGTTTGACTGGATGGA 89755 Query 230342 GCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAG 230401 ||||| || ||||| || || || ||||||||||| ||||| ||| |||| || |||| Sbjct 89754 ACTCATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAATACCAAAA 89695 Query 230402 GCCCGGTGT 230410 | | ||||| Sbjct 89694 GGCGGGTGT 89686 >seq15 Length=511330 Score = 109 bits (120), Expect = 1e-18 Identities = 112/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 316151 CGTCAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCG 316210 |||||||| ||| ||||||||||||| | |||||||| ||||||||| ||||||| Sbjct 117007 CGTCAAGTT-TTCCTTGTCTTCACCGGTGGAGAAACGCCATCGGATGTACTCGTTGGGCG 117065 Query 316211 TCATGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCA 316270 || |||| | || | ||||| ||||||||| |||||||| || ||||| || |||| Sbjct 117066 TCTTGTCCAAGTGCTGCTCGACGTGGTGGAACGCGTGCTGCGCGACGTACGCGTAGCGCA 117125 Query 316271 TATTTGGATGCTTCCAAACGCTACC 316295 |||| || || ||| ||| |||| Sbjct 117126 TATTCGGGTGACGCCAGACGGTACC 117150 >seq6 Length=793623 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 316183 TAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 316242 |||||||| | ||||| | ||| |||||| |||| || || | || |||||||||||| Sbjct 618226 TAACGCCAGCGAATGTATTCATTCGGCGTCTTGTCGAGGTGTTGTTCAATGTGGTGGAAA 618167 Query 316243 GCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTACC 316295 |||||||| || ||||| || | || ||||||||||||||||| |||| Sbjct 618166 GCGTGCTGGGCGACGTACGCCACTCGGGCGTTTGGATGCTTCCAAACCGTACC 618114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738931773080