Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02]
20 sequences; 12,916,858 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq12 168 5e-37
seq7 136 3e-27
seq8 129 4e-25
>seq12
Length=542657
Score = 168 bits (186), Expect = 5e-37
Identities = 164/211 (78%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| |||||| |||||| ||||||||||| ||||| | ||| |||| ||
Sbjct 189327 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189268
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| ||||| ||||||||||| |||||||| | || | |||||||| ||
Sbjct 189267 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189208
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | |||||||| | ||| ||||| || | |||||| |||||
Sbjct 189207 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189148
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||||||| |||||||||||||||||||||
Sbjct 189147 GCCCGTGAGCGTCTTCACGAAGATTTGCATG 189117
Score = 168 bits (186), Expect = 5e-37
Identities = 164/211 (78%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| |||||| |||||| ||||||||||| ||||| | ||| |||| ||
Sbjct 189555 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189496
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| ||||| ||||||||||| |||||||| | || | |||||||| ||
Sbjct 189495 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189436
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | |||||||| | ||| ||||| || | |||||| |||||
Sbjct 189435 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189376
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||||||| |||||||||||||||||||||
Sbjct 189375 ACCCGTGAGCGTCTTCACGAAGATTTGCATG 189345
Score = 168 bits (186), Expect = 5e-37
Identities = 164/211 (78%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| |||||| |||||| ||||||||||| ||||| | ||| |||| ||
Sbjct 189783 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189724
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| ||||| ||||||||||| |||||||| | || | |||||||| ||
Sbjct 189723 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189664
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | |||||||| | ||| ||||| || | |||||| |||||
Sbjct 189663 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189604
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||||||| |||||||||||||||||||||
Sbjct 189603 ACCCGTGAGCGTCTTCACGAAGATTTGCATG 189573
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| |||||| |||||| ||||||||||| ||||| | ||| | || ||
Sbjct 189099 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTC 189040
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||||||| ||||| ||||||||||| ||||||||
Sbjct 189039 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATC 189004
>seq7
Length=770246
Score = 136 bits (150), Expect = 3e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
||||| | || | |||||||| ||| |||||| |||||||||||||||||| ||||||
Sbjct 134647 CCCCCGCGCAAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCG 134588
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| |||| || || ||||| || || ||||||| ||| |||||||| | ||
Sbjct 134587 AGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGG 134528
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| || ||||| || |||||| ||||| | | |||||||| | ||| ||||||
Sbjct 134527 ATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 134468
Query 44291 TCCACCGTAATCGTCTTTCCCGT 44313
|||| || || ||||| |||||
Sbjct 134467 TCCAAGGTGATGGTCTTACCCGT 134445
>seq8
Length=717457
Score = 129 bits (142), Expect = 4e-25
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || |||| || | |||||||| ||| ||||| |||||||||||||||||||||
Sbjct 310651 ATACCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCC 310592
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
|| | ||| |||| || ||||||||||| || || |||||||| |||||||| |
Sbjct 310591 GCCAACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGC 310532
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | || ||||| || |||||| ||||| | | |||||||| | ||| |||
Sbjct 310531 GGGATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCC 310472
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGT 44313
||||||| || || ||||| || ||
Sbjct 310471 ACCTCCAAGGTGATGGTCTTACCAGT 310446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990312252340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |