Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq12 168 5e-37 seq7 136 3e-27 seq8 129 4e-25 >seq12 Length=542657 Score = 168 bits (186), Expect = 5e-37 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| |||||| |||||| ||||||||||| ||||| | ||| |||| || Sbjct 189327 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189268 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||||||| |||||||| | || | |||||||| || Sbjct 189267 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189208 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | |||||||| | ||| ||||| || | |||||| ||||| Sbjct 189207 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189148 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| ||||||||||||||||||||| Sbjct 189147 GCCCGTGAGCGTCTTCACGAAGATTTGCATG 189117 Score = 168 bits (186), Expect = 5e-37 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| |||||| |||||| ||||||||||| ||||| | ||| |||| || Sbjct 189555 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189496 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||||||| |||||||| | || | |||||||| || Sbjct 189495 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189436 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | |||||||| | ||| ||||| || | |||||| ||||| Sbjct 189435 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189376 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| ||||||||||||||||||||| Sbjct 189375 ACCCGTGAGCGTCTTCACGAAGATTTGCATG 189345 Score = 168 bits (186), Expect = 5e-37 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| |||||| |||||| ||||||||||| ||||| | ||| |||| || Sbjct 189783 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCGTCCTC 189724 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||||||| |||||||| | || | |||||||| || Sbjct 189723 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGGGATGCCTTCCTTGTCTTG 189664 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | |||||||| | ||| ||||| || | |||||| ||||| Sbjct 189663 GATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACTTCGAGCGTAATGGTCTT 189604 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| ||||||||||||||||||||| Sbjct 189603 ACCCGTGAGCGTCTTCACGAAGATTTGCATG 189573 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| |||||| |||||| ||||||||||| ||||| | ||| | || || Sbjct 189099 CACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTC 189040 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||||| ||||| ||||||||||| |||||||| Sbjct 189039 GAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATC 189004 >seq7 Length=770246 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||| | || | |||||||| ||| |||||| |||||||||||||||||| |||||| Sbjct 134647 CCCCCGCGCAAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCG 134588 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || || ||||| || || ||||||| ||| |||||||| | || Sbjct 134587 AGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGGCGGG 134528 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| || |||||| ||||| | | |||||||| | ||| |||||| Sbjct 134527 ATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 134468 Query 44291 TCCACCGTAATCGTCTTTCCCGT 44313 |||| || || ||||| ||||| Sbjct 134467 TCCAAGGTGATGGTCTTACCCGT 134445 >seq8 Length=717457 Score = 129 bits (142), Expect = 4e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||| || | |||||||| ||| ||||| ||||||||||||||||||||| Sbjct 310651 ATACCACCTCGCAAGCGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCC 310592 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 || | ||| |||| || ||||||||||| || || |||||||| |||||||| | Sbjct 310591 GCCAACGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGC 310532 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | || ||||| || |||||| ||||| | | |||||||| | ||| ||| Sbjct 310531 GGGATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCC 310472 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||||| || || ||||| || || Sbjct 310471 ACCTCCAAGGTGATGGTCTTACCAGT 310446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990312252340