Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 154 4e-32 seq7 122 2e-22 seq8 116 9e-21 >seq12 Length=542657 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || || || || || ||||| ||||| ||| ||| Sbjct 189121 CAAATCTTCGTGAAGACGCTCACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCGGAC 189180 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| ||||| |||||| Sbjct 189181 ACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAGCAA 189240 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || |||||||| || || | ||| | ||||| || ||| || Sbjct 189241 CGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAACATC 189300 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 189301 CAGAAGGAGTCCACGCTCCA-CTTG 189324 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || || || || || ||||| ||||| ||| ||| Sbjct 189349 CAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCGGAC 189408 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| ||||| |||||| Sbjct 189409 ACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAGCAA 189468 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || |||||||| || || | ||| | ||||| || ||| || Sbjct 189469 CGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAACATC 189528 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 189529 CAGAAGGAGTCCACGCTCCA-CTTG 189552 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || || || || || ||||| ||||| ||| ||| Sbjct 189577 CAAATCTTCGTGAAGACGCTCACGGGTAAGACCATTACGCTCGAAGTGGAGTCCTCGGAC 189636 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| ||||| |||||| Sbjct 189637 ACCATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCGCCGGATCAGCAA 189696 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || |||||||| || || | ||| | ||||| || ||| || Sbjct 189697 CGTTTGATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACTTTGGCCGACTACAACATC 189756 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 189757 CAGAAGGAGTCCACGCTCCA-CTTG 189780 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| ||||| |||||||| ||||||||||| ||| ||| Sbjct 188544 CAGATCTTCGTCAAAACGCTCACGGGAAAGACGATCACGCTCGAGGTGGAGTCCTCGGAC 188603 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||| |||||||| |||||||||||||| || || Sbjct 188604 ACGATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAGGG 188644 >seq7 Length=770246 Score = 122 bits (134), Expect = 2e-22 Identities = 138/184 (75%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||| | |||||||| ||| ||||||||||| ||||| || Sbjct 134445 ACGGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCG 134504 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || || || || || ||||| ||||| |||||||| || |||||||| || || Sbjct 134505 AAGATCCAAGATAAGGAGGGGATCCCGCCGGATCAGCAACGTCTGATCTTCGCGGGTAAG 134564 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || || | || || ||||| || ||| ||||||| || || || || || Sbjct 134565 CAACTCGAGGACGGCCGCACGCTCGCCGACTACAACATCCAAAAGGAGTCCACGCTCCA- 134623 Query 178125 CTTG 178128 |||| Sbjct 134624 CTTG 134627 >seq8 Length=717457 Score = 116 bits (128), Expect = 9e-21 Identities = 147/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 |||||| ||| | | || || || || |||||| | |||||||| ||| ||||||| Sbjct 310429 TTTTCGCGAACGCAGTGACTGGTAAGACCATCACCTTGGAGGTGGAGTCCTCGGACACCA 310488 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 |||| ||||| || ||||| || || || || || ||||| ||||| |||||||| Sbjct 310489 TCGACAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATCCCGCCGGATCAGCAACGTT 310548 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 | || ||||| || || |||||||| || || | || | || ||||| ||| |||||| Sbjct 310549 TGATTTTCGCGGGGAAGCAGCTCGAGGACGGCCGCACGTTGGCGGATTACAACATCCAAA 310608 Query 178108 AAGAATCAACACTGCATCTTG 178128 | || || || || || |||| Sbjct 310609 AGGAGTCTACGCTCCA-CTTG 310628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730891543880