Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ostreococcus_20tauri_20[genbank_20GCA_5F000214015.2_202014-10-02] 20 sequences; 12,916,858 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12 129 5e-25 seq7 118 1e-21 seq8 86.0 6e-12 >seq12 Length=542657 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | || | ||||| || |||||| ||||||||| ||||| ||||||| Sbjct 189573 GCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 189514 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| |||| ||||||||||| |||||||| |||| || || || |||| || Sbjct 189513 CAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGG 189454 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||| | || | || || | ||| | | | ||||| ||||||| Sbjct 189453 GATGCCTTCCTTGT-CTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCA 189395 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || |||||||| |||||||| ||||| || |||||| Sbjct 189394 CTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCATG 189345 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | || | ||||| || |||||| ||||||||| ||||| ||||||| Sbjct 189801 GCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 189742 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| |||| ||||||||||| |||||||| |||| || || || |||| || Sbjct 189741 CAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGG 189682 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||| | || | || || | ||| | | | ||||| ||||||| Sbjct 189681 GATGCCTTCCTTGT-CTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCA 189623 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || |||||||| |||||||| ||||| || |||||| Sbjct 189622 CTTCGAGCGTAATGGTCTTACCCGTGAGCGTCTTCACGAAGATTTGCATG 189573 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | || | ||||| || |||||| ||||||||| ||||| ||||||| Sbjct 189345 GCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 189286 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| |||| ||||||||||| |||||||| |||| || || || |||| || Sbjct 189285 CAAAGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGG 189226 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||| | || | || || | ||| | | | ||||| ||||||| Sbjct 189225 GATGCCTTCCTTGT-CTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCA 189167 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || ||||| |||||||| ||||| || |||||| Sbjct 189166 CTTCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTCACGAAGATTTGCATG 189117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | || | ||||| || |||||| ||||||||| ||||| ||||||| Sbjct 189117 GCCACCGCGCAAGCGGAGCACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 189058 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGG 41753 | ||||| | || ||||||||||| |||||||| |||| || || || ||| |||| Sbjct 189057 CAAAGTGCGACCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCCGGCGG 188998 Query 41754 GAACGCTCTC 41763 || | || || Sbjct 188997 GATCCCTATC 188988 >seq7 Length=770246 Score = 118 bits (130), Expect = 1e-21 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || ||||| | || ||||||| || |||||| |||||| || ||||| ||||| Sbjct 134651 ACCACCCCCGCGCAAGCGCAACACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTC 134592 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG- 41750 || ||| ||||| |||| ||||| ||||| || ||||| ||||| || || || |||| Sbjct 134591 GGCGAGCGTGCGGCCGTCCTCGAGTTGCTTACCCGCGAAGATCAGACGTTGCTGATCCGG 134532 Query 41751 CGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGAC 41809 ||||| | | |||||| || ||| || ||||| || | | | ||||| ||| Sbjct 134531 CGGGATCCC-CTCCTTATCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGAC 134474 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCA 41840 |||||||||| || || || |||||||||| Sbjct 134473 TCCACCTCCAAGGTGATGGTCTTACCCGTCA 134443 >seq8 Length=717457 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || ||||||| || ||||| |||||| || ||||| || || | | ||||| || Sbjct 310636 CGCAACACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCCAACGTGCGGCCG 310577 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || ||||||||||| || ||||| |||| || || || |||| || | || |||||| Sbjct 310576 TCCTCGAGCTGCTTCCCCGCGAAAATCAAACGTTGCTGATCCGGCGGGATGCCCTCCTTA 310517 Query 41768 TCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 || ||| || |||| ||| | | | ||||| ||||||||||||| || || Sbjct 310516 TCTTGGATCTTCGCCTTC-ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGAT 310458 Query 41827 CGTTTTACCCGTCA 41840 || ||||| |||| Sbjct 310457 GGTCTTACCAGTCA 310444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303884424000